Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq174 102 7e-17 seq122 84.2 2e-11 >seq174 Length=2756573 Score = 102 bits (112), Expect = 7e-17 Identities = 121/163 (74%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 30160 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30219 || || ||||| ||||| ||||||||||| || || || || || || ||||| || || Sbjct 401085 TATTCAGCTCCAAAATGTCTCCACTGGAAGCCATAAACTGGGCCAAGATCTCCTTCCTCT 401026 Query 30220 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 30279 ||| | ||| ||| |||||| || || || | ||||||||||| |||||||| || Sbjct 401025 CTGGAATAGAATCCCTGCTTGTCTAAGAATTCACGAGAACCGTTGGCATCCCAGATTTTA 400966 Query 30280 ACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTG 30321 || || || | || |||||||| | ||||| || |||| || Sbjct 400965 ACTCCTTTAGCAGAAAGCTCTTTTGCATTTGTAGAGCCCTGTG 400923 >seq122 Length=3335659 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 112112 TGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAACC 112171 ||||||| |||| ||| || |||| | | | ||| | ||| || || || |||||||||| Sbjct 1371645 TGCTGAGTACTATGTTAATTCTGTTTTTTAAAGGGCGATTTTTCTCAGGAATGGAGAACC 1371704 Query 112172 AAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTG 112212 ||||||| |||||||||| || ||||| || || ||| || Sbjct 1371705 AAGTCTTCTTACCCATTATTACTACGTTTTGTTTTCCTGTG 1371745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408549129608777