Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq534 168 1e-36 seq32 125 1e-23 seq148 114 2e-20 seq293 87.8 3e-12 >seq534 Length=899607 Score = 168 bits (186), Expect = 1e-36 Identities = 180/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||| ||||| | | || ||| || ||| | ||| ||||| || ||||||||||||| Sbjct 753723 GCTGGCAGCCGTTGTTCACGTGGTTCATGACTTTCTGCTTGAGCTGCGCCACCTGGTCCC 753782 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 |||| || || || |||||||||| ||||| || ||||| | |||||| |||| Sbjct 753783 GCAGCGCGCTGGCCGTGCTGGACAGTCCCGCGTTCTCGGACTTCAAGGTCTTCACCTTCT 753842 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 |||||||||| |||||||| ||||| || | | | ||| |||||||| |||| ||||| Sbjct 753843 CCTCCAGCCGGGCGATGCGCTCCAGCTTCCTCTTCCTGCACTTGGTGGCGGCCAGGCGGT 753902 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 | || || | ||| | ||| ||||||| || |||||||| ||||||| ||| || || Sbjct 753903 TGCGCAGCCGCTTCCTCTCCACCTTGATCCGCTCCTGGTCTTCCATGTTGATGGGGGA 753960 Score = 84.2 bits (92), Expect = 4e-11 Identities = 87/115 (76%), Gaps = 8/115 (7%) Strand=Plus/Plus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||| ||||| || |||||| |||||||||| || || || ||||||| ||||||| Sbjct 753756 TCTGCTTGAGCTGCGCCACCTGGTCCCGCAGCGCGCTGGCCGTGCTGGACAGTCCCGCGT 753815 Query 238986 TATCAGACTTGAG--------CATTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || ||||| | | |||||||||||||| |||||||| |||||||| Sbjct 753816 TCTCGGACTTCAAGGTCTTCACCTTCTCCTCCAGCCGGGCGATGCGCTCCAGCTT 753870 >seq32 Length=5936712 Score = 125 bits (138), Expect = 1e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || |||| ||| ||||| ||||||||||| || |||| | | ||||| || || Sbjct 3278787 AGCACCTTCTGCTTGAGCTGGGCCACCTGCTCGCGCAACAGGTTGGCGGTGGAGGCGAGC 3278846 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| ||| || || |||||||| |||| |||||| ||||| Sbjct 3278847 TCCGTGTTCTGGCTCTTGAGGCTCTTGACCTTGTCCTCCAGGCGCGAGATGCGCTCCAGC 3278906 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||||| ||||| |||| ||| || | ||||| || || | ||| || ||||||||| Sbjct 3278907 TTGCGCCGCCGGCACTTGGAGGCGGCGATCCGGTTGCGCAGCCGCTTGCGCTCCGCCTTG 3278966 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 ||||| ||||| ||||| ||||| || || Sbjct 3278967 ATGCGCTCCTGCGTGTCCATATCGATGGGCGA 3278998 >seq148 Length=2989754 Score = 114 bits (126), Expect = 2e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| |||||||||||| ||||||||||| ||| || ||||||||||| ||| Sbjct 2372610 GTGTACTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATTGTCCCCAGGTTCTGCTGG 2372551 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| || ||||||||||||||||| |||| ||| ||||| |||| Sbjct 2372550 TTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTATGGGGTCCCCGTCTCCGTCTGG 2372491 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCAC 213688 ||| | | || | |||||| | | |||||| || || Sbjct 2372490 GACTCAATGATGGCGTACCAGAGCTGCTGGGCCTTCACGAC 2372450 Score = 87.8 bits (96), Expect = 3e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATA-T 212754 |||||| ||||| |||||||| ||||| | ||| ||| || ||||| | | || | Sbjct 2379605 GTTCAGCGACTGGCTCTGGTCAATGAAGGCCCCCCGGTCGGCAGCCATCTTGAGGACCGT 2379546 Query 212755 CTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGG 212814 || ||||||| | ||||||||| |||||| ||| | ||| ||||||||||| | | | Sbjct 2379545 CT-TCTGGGAAATCTCCCACACCGTCTTGTAGAGCTGTTTCAGGTCCTCTGGAATCTCAG 2379487 Query 212815 GGATGTTCTG 212824 |||||||||| Sbjct 2379486 GGATGTTCTG 2379477 >seq293 Length=1769382 Score = 87.8 bits (96), Expect = 3e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 241490 TTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCAT 241549 |||||| |||| || ||||||||||| || |||||||| ||||| |||||||||||||| Sbjct 1136680 TTGAGCGCCTTGACCTTCTCCTCCAGGCGGGCGATGCGCTCCAGCTTGCGCCGGCGGCAC 1136739 Query 241550 TTGGTGGCTGCCAAGCGG 241567 |||| ||| || | |||| Sbjct 1136740 TTGGAGGCCGCGATGCGG 1136757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931372704444160