Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq119 176 3e-38 seq277 111 1e-18 seq7 96.9 2e-14 >seq119 Length=3366018 Score = 176 bits (194), Expect = 3e-38 Identities = 367/537 (68%), Gaps = 11/537 (2%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 |||| |||||| | || ||||| ||| ||||| | || || || |||| || || | Sbjct 3318471 TTGGCATTGATCTTGGCACTACCTACTCCTGTGTGGGTGCTTTTCAGCATGGCAAGGTGG 3318412 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 |||| ||||||||||| || ||||| || || || ||| || ||| | |||| || | Sbjct 3318411 AAATCATTGCCAATGATCAGGGTAACAGGACCACGCCAGGCTACGTTGC-CTTACAGATA 3318353 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || || |||||||||||||| || | |||| || || || || | Sbjct 3318352 CAGAGAGGCTCATTGGAGATGCTGCAAATAACCAAGTGGCCATGAACCCCACAAACATGG 3318293 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | |||||||| ||| |||||||||| | |||||| || | |||||| ||||||| Sbjct 3318292 TATTTGATGCAAAACACCTGATTGGTCGCAGATTTGATTATGCTGTTGTCCAGTCTGATA 3318233 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATA--TATAGAAGCAAT 474630 || || |||||||| | || | |||| || ||||| ||| | | || | | | Sbjct 3318232 TGAAACACTGGCCTTTCACTGTTGTGAATGATGATGGTAGGCCAAAAGTCCAGGTGGAGT 3318173 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| ||| ||||| || |||| || || | || || || || || || |||| Sbjct 3318172 ACA--AAGGAGAAACGAAGAGCTTTTATCCCGAGGAGATATCCTCTATAGTGCTAACCAA 3318115 Query 474691 AATGA--AACAAACCGCGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTAC 474747 ||||| || | | | |||| | || ||||| |||| ||| ||| | || |||| Sbjct 3318114 AATGAACAAGATAAC-CGAG-GCGTA-CTTGGGAAAGACAGTTACTAACGCCACGGTTAC 3318058 Query 474748 TGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGC 474807 || ||||| ||||| ||||| || |||| || | || |||||||| |||| ||||| Sbjct 3318057 AGTCCCAGCTTATTTCAATGACTCCCAACACCAGGTGACAAAAGATGCTGGAACCATTGC 3317998 Query 474808 AGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 || |||||||| | | || |||||||| ||||| || | || |||||||||| Sbjct 3317997 TGGCCTTAATGTGCTCCAAATCATTAATGAGCCAACTGCCACTGCTTTTGCTTATGG 3317941 Score = 114 bits (126), Expect = 8e-20 Identities = 247/366 (67%), Gaps = 5/366 (1%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 |||| |||||| | || ||||| ||| ||||| | || || || |||| || || | Sbjct 3320041 TTGGCATTGATCTTGGCACTACCTACTCCTGTGTGGGTGCTTTTCAGCATGGCAAGGTGG 3319982 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 |||| ||||||||||| || ||||| || || || ||| || ||| | |||| || | Sbjct 3319981 AAATCATTGCCAATGATCAGGGTAACAGGACCACGCCAGGCTACGTTGC-CTTACAGATA 3319923 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || || |||||||||||||| || | |||| || || || || | Sbjct 3319922 CAGAGAGGCTCATTGGAGATGCTGCAAATAACCAAGTGGCCATGAACCCCACAAACATGG 3319863 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | |||||||| ||| |||||||||| | |||||| || | |||||| ||||||| Sbjct 3319862 TATTTGATGCAAAACACCTGATTGGTCGCAGATTTGATTATGCTGTTGTCCAGTCTGATA 3319803 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATA--TATAGAAGCAAT 474630 || || |||||||| | || | |||| || ||||| ||| | | || | | | Sbjct 3319802 TGAAACACTGGCCTTTCACTGTTGTGAATGATGATGGTAGGCCAAAAGTCCAGGTGGAGT 3319743 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| || ||||| || |||| || || | || || || ||||| || |||| Sbjct 3319742 ACA--AAGCAGAAACAAAGAGCTTTTATCCTGAGGAGATATCCTCTATGGTGCTAACCAA 3319685 Query 474691 AATGAA 474696 |||||| Sbjct 3319684 AATGAA 3319679 >seq277 Length=1877347 Score = 111 bits (122), Expect = 1e-18 Identities = 276/413 (67%), Gaps = 6/413 (1%) Strand=Plus/Plus Query 475763 TTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCT 475822 || ||||| ||| || | || ||||| | || |||||||||||||| || || || ||| Sbjct 578314 TTCAATGGCAAAGAGCTCAACAAAAGTATCAACCCTGATGAAGCTGTGGCTTACGGTGCT 578373 Query 475823 GCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGAC-GAGAAACTAAATAATATTGTACT 475881 ||||| || || || || | ||| | || | ||||| | | | || | || Sbjct 578374 GCTGTGCAGGCTGCAATCCTGATGGGTGACA-AGTCTGAGAATGTGCAAGACCTTCTGCT 578432 Query 475882 TGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCT 475941 |||| || | ||||| ||| | || |||| || | ||| || | |||||| | Sbjct 578433 CCTTGATGTCGCACCACTGTCACTGGGCATTGAGACGGCTGGTGGTGTGATGACTGCCTT 578492 Query 475942 TATTGACAGAAATACTCCTATCCCATGCAAA--AAATCAAAAGTATTTTCCACTTATTCT 475999 ||| | | || ||| |||| || | |||| | | | | | || |||| ||||| Sbjct 578493 GATTAAACGCAACACTACTATTCC-TACAAAGCAGACCCAGACC-TTCACCACCTATTCA 578550 Query 476000 GATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGAT 476059 || || || | | ||| | || | | ||| |||||| || | ||||| || Sbjct 578551 GACAACCAGAACAGTGTGCTGGTGCAGGTGTATGAGGGTGAACGAGCCATGACTAAGGAC 578610 Query 476060 AATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCT 476119 |||||| || || | ||| | || ||||||||| || || ||| | || || || Sbjct 578611 AATAACTTGCTAGGCAAGTTTGACCTAACAGGTATTCCACCAGCACCCCGTGGTGTGCCA 578670 Query 476120 CAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGC 476172 ||||| ||||| |||||||| |||||||||||||| |||||||| || || || Sbjct 578671 CAAATCGAAGTCACTTTTGACATTGATGCAAATGGCATTCTTAACGTCACAGC 578723 >seq7 Length=9770732 Score = 96.9 bits (106), Expect = 2e-14 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 |||| |||||| | || ||||| ||| ||||| | ||||| || |||| || || | Sbjct 4203879 TTGGCATTGATCTTGGCACTACCTACTCCTGTGTGGGTGTTTTCCAGCATGGCAAGGTGG 4203938 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 |||| ||||||||||| || ||||| || || || ||| || ||| | ||||| || | Sbjct 4203939 AAATCATTGCCAATGATCAGGGTAACAGGACCACGCCAAGCTACGTTGCCTTTACAGACA 4203998 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAG 474488 | || ||||||||||||||||| || | |||| Sbjct 4203999 CAGAGAGGCTTATTGGAGATGCTGCGAAGAACCAAG 4204034 Score = 95.1 bits (104), Expect = 8e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || |||||||| |||||||| || |||||||| || ||||| || |||||||||||||| Sbjct 4206519 GGCATTCCTCCAGCTCCCAGGGGGGTTCCTCAGATCGAAGTGACGTTTGATATTGATGCC 4206578 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 |||||||| || ||||| ||||| ||||| Sbjct 4206579 AATGGTATCCTCAATGTGTCTGCTGTGGATAA 4206610 Score = 86.0 bits (94), Expect = 4e-11 Identities = 219/328 (67%), Gaps = 4/328 (1%) Strand=Plus/Plus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||| ||||| ||||| ||||| | ||||| ||| ||||| | | | ||||| | Sbjct 4205370 ACTGCCTGTGAGCGTGCGAAGCGTACCCTTTCCTCTAGCACTCAGGCCAGTATTGAAATC 4205429 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 ||||| || | || || ||||| | |||| ||||| || ||| |||||||| Sbjct 4205430 GATTCCCTGTACGAGGGCATTGACTTCTATACCTCAATTACTAGAGCTCGCTTTGAAGAG 4205489 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | |||| | || | || | || ||||| || ||| || | ||| | Sbjct 4205490 CTGAATGCTGACTTGTTCCGTGGCACTCTGGATCCCGTGGAGAAAGCCCTGCGGGATGCG 4205549 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 || || || ||||| || || ||||| ||||| || || || || || || |||| || Sbjct 4205550 AAGCTCGATAAATCTCAGGTACATGACATTGTCCTGGTTGGCGGGTCCACCCGAATCCCC 4205609 Query 475736 AAAATAAGAGAAA-TGCTTTCATCATATTTT-AATGGTAAAAAGTTAAATGAAAGTGTAA 475793 ||||| |||| ||||| || | | || || || ||| | | || | || | | Sbjct 4205610 AAAATCC-AGAAGCTGCTT-CAGGACTTCTTCAACGGCAAAGAACTCAACAAGAGCATCA 4205667 Query 475794 ATCCTGATGAAGCTGTTGCATATGGAGC 475821 |||||||||||||||| || || ||||| Sbjct 4205668 ATCCTGATGAAGCTGTAGCTTACGGAGC 4205695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267589438679852