Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq548 165 1e-34 seq604 156 5e-32 seq21 152 6e-31 seq148 107 2e-17 seq552 93.3 5e-13 >seq548 Length=871607 Score = 165 bits (182), Expect = 1e-34 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| || || | ||||||||||||||||| || | | || Sbjct 782939 GCTTGGCCAGCTCTCCGGGCAGGAGGAGCCTGACGGCGGTCTGGATCTCCCGGGAGGGGA 782998 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || || || ||| |||||||| | ||||||| |||| | Sbjct 782999 TGGTGGAGCGCTTGTTGTAATGGGCGAGCCGGGAGGCCTCGGCGGCGATGCGCTCGAAGA 783058 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| |||||||||| ||| | |||| |||||||||| ||| |||| Sbjct 783059 TGTCGTTGACAAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCCGTGTCCGGGT 783118 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | ||||||||||| |||||||||| Sbjct 783119 GGACCTGCTTGAGGACCTTGTAGA 783142 Score = 161 bits (178), Expect = 1e-33 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| || || | ||||||||||||||||| || | | || Sbjct 289277 GCTTGGCCAGCTCTCCGGGCAGGAGGAGCCTGACGGCGGTCTGGATCTCCCGGGAGGTGA 289218 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || || || ||| |||||||| | ||||||| |||| | Sbjct 289217 TGGTGGAGCGCTTGTTGTAATGGGCGAGGCGGGAGGCCTCGGCGGCGATGCGCTCGAAGA 289158 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 289157 TGTCGTTGACAAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCCGGGT 289098 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | ||||||||||| |||||||||| Sbjct 289097 GGACCTGCTTGAGGACCTTGTAGA 289074 Score = 156 bits (172), Expect = 5e-32 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| || || | ||||||||||||||||| || | | || Sbjct 293916 GCTTGGCCAGCTCTCCGGGCAGGAGGAGCCTGACGGCGGTCTGGATCTCCCGGGAGGTGA 293975 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || || || ||| |||||||| | ||||||| |||| | Sbjct 293976 TGGTGGAGCGCTTGTTGTAATGGGCGAGGCGGGAGGCCTCGGCGGCGATGCGCTCGAAGA 294035 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 294036 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCCGGGT 294095 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | ||||||||||| |||||||||| Sbjct 294096 GGACCTGCTTGAGGACCTTGTAGA 294119 Score = 156 bits (172), Expect = 5e-32 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| || || | ||||||||||||||||| || | | || Sbjct 313525 GCTTGGCCAGCTCTCCGGGCAGGAGGAGCCTGACGGCGGTCTGGATCTCCCGGGAGGTGA 313584 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || || || ||| |||||||| | ||||||| |||| | Sbjct 313585 TGGTGGAGCGCTTGTTGTAATGGGCGAGGCGGGAGGCCTCGGCGGCGATGCGCTCGAAAA 313644 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 313645 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCCGGGT 313704 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | ||||||||||| |||||||||| Sbjct 313705 GGACCTGCTTGAGGACCTTGTAGA 313728 Score = 156 bits (172), Expect = 5e-32 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| || || | ||||||||||||||||| || | | || Sbjct 332530 GCTTGGCCAGCTCTCCGGGCAGGAGGAGCCTGACGGCGGTCTGGATCTCCCGGGAGGTGA 332471 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || || || ||| |||||||| | ||||||| |||| | Sbjct 332470 TGGTGGAGCGCTTGTTGTAATGGGCGAGGCGGGAGGCCTCGGCGGCGATGCGCTCGAAGA 332411 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 332410 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCCGGGT 332351 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | ||||||||||| |||||||||| Sbjct 332350 GGACCTGCTTGAGGACCTTGTAGA 332327 Score = 156 bits (172), Expect = 5e-32 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| || || | ||||||||||||||||| || | | || Sbjct 355101 GCTTGGCCAGCTCTCCGGGCAGGAGGAGCCTGACGGCGGTCTGGATCTCCCGGGAGGTGA 355160 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || || || ||| |||||||| | ||||||| |||| | Sbjct 355161 TGGTGGAGCGCTTGTTGTAATGGGCGAGGCGGGAGGCCTCGGCGGCGATGCGCTCGAAGA 355220 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 355221 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCCGGGT 355280 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | ||||||||||| |||||||||| Sbjct 355281 GGACCTGCTTGAGGACCTTGTAGA 355304 >seq604 Length=741506 Score = 156 bits (172), Expect = 5e-32 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| || || | ||||||||||||||||| || | | || Sbjct 470270 GCTTGGCCAGCTCTCCGGGCAGGAGGAGCCTGACGGCGGTCTGGATCTCCCGGGAGGTGA 470329 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || || || ||| |||||||| | ||||||| |||| | Sbjct 470330 TGGTGGAGCGCTTGTTGTAATGGGCGAGGCGGGAGGCCTCGGCGGCGATGCGCTCGAAGA 470389 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 470390 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCCGGGT 470449 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | ||||||||||| |||||||||| Sbjct 470450 GGACCTGCTTGAGGACCTTGTAGA 470473 >seq21 Length=6710168 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||||||||||||||||||||||| || | | || Sbjct 5052261 GCTTGGCCAGCTCGCCGGGCAGCAGGAGGCGCACGGCGGTCTGGATCTCCCGGGAGGTGA 5052320 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| |||||| | ||||| |||| | Sbjct 5052321 TGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGGGAGGCCTCCCCTGCAATGCGCTCGAAGA 5052380 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 5052381 TGTCGTTCACGAAGGAGTTCATGATGCTCATGGCCTTGGACGAGATGCCCGTGTCCGGGT 5052440 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 5052441 GGACCTGCTTCAGCACCTTGTA 5052462 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||||||||||||||||||||||| || | | || Sbjct 5066743 GCTTGGCCAGCTCGCCGGGCAGCAGGAGGCGCACGGCGGTCTGGATCTCCCGGGAGGTGA 5066684 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| |||||| | ||||| |||| | Sbjct 5066683 TGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGGGAGGCCTCCCCTGCAATGCGCTCGAAGA 5066624 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 5066623 TGTCGTTCACGAAGGAGTTCATGATGCTCATGGCCTTGGACGAGATGCCCGTGTCCGGGT 5066564 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 5066563 GGACCTGCTTCAGCACCTTGTA 5066542 >seq148 Length=2989754 Score = 107 bits (118), Expect = 2e-17 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 |||||||||||||| |||||| || | | || |||||||||||||||||| | || Sbjct 2372601 ACGATCTCGGTGCAGAGGTTGCTGCACTTGATTGTCCCCAGGTTCTGCTGGTTGCTCTTC 2372542 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 ||||| || |||||||| ||||||||| || | || ||||| |||| | | | | | Sbjct 2372541 CGGTTGCAGGAGTCCTTGTAGAGCATGTATGGGGTCCCCGTCTCCGTCTGGGACTCAATG 2372482 Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335 ||||| |||||| ||| | || |||||| | ||| |||| |||| Sbjct 2372481 ATGGCGTACCAGAGCTGCTGGGCCTTCACGACTCTGCGCACGCGCCCCT 2372433 Score = 100 bits (110), Expect = 3e-15 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 1630175 CGGCAAAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGT 1630234 |||| | || ||||| || || ||||||||||||||||||||||| || |||||||||| Sbjct 2369005 CGGCCACCCCAATGCCCCCAGCAGACTTGGAGATGAGCGCGCACTGCTTCAGCGTGTCGT 2368946 Query 1630235 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCA 1630277 |||| || ||||| |||| |||||||| || |||||||| Sbjct 2368945 AGATCCCTTCGATGCTGTCGTCCTTCATGCACAGCAGAAAGCA 2368903 >seq552 Length=859566 Score = 93.3 bits (102), Expect = 5e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 ||||||||||||||||||| ||||||||||| | |||||| | |||||| |||||| Sbjct 672692 CGTCATCTCCTTTGACGGCTCCTACGTCAACTATCGCCACCTGGCGCTGCTGTGCGACAC 672633 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCG 512160 |||| || |||||| || ||||| |||| || || ||| ||||||| Sbjct 672632 CATGACGTGTCGCGGACACTTGATGGCCATCACCCGGCATGGCGTCAACCG 672582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106010892673433