Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq277 235 4e-56 seq119 158 9e-33 seq7 105 5e-17 seq418 102 6e-16 seq528 91.5 1e-12 >seq277 Length=1877347 Score = 235 bits (260), Expect = 4e-56 Identities = 942/1462 (64%), Gaps = 26/1462 (2%) Strand=Plus/Minus Query 281380 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 281439 ||||||||| ||||| || || |||| ||| ||| || | || || || ||||| Sbjct 578769 ATTAGTAATTGTAATCTTGTTCTCTTTGCCTGTGCTTTTGTCCACTGCTGTGACGTTAAG 578710 Query 281440 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 281499 ||| ||||| ||||| | ||||| |||||||| ||||| || || || | | || || Sbjct 578709 AATGCCATTTGCATCAATGTCAAAAGTGACTTCGATTTGTGGCACACCACGGGGTGCTGG 578650 Query 281500 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 281559 ||| || ||| | | ||| | || || ||||| || ||||| | |||||| Sbjct 578649 TGGAATACCTGTTAGGTCAAACTTGCCTAGCAAGTTATTGTCCTTAGTCATGGCTCGTTC 578590 Query 281560 ACCCTCGAAAATTTGGATAGTAACTACAGTT-TGATTATCTGAATAAGTTGTAAATACTC 281618 |||||| | | || | || || ||| || || |||||||| || || || || Sbjct 578589 ACCCTCATACACCTGCACCAGCAC-ACTGTTCTGGTTGTCTGAATAGGTGGTGAAGG-TC 578532 Query 281619 TGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCA 281677 ||| | | || |||||| || ||||| | | ||| | ||||| | ||||||| Sbjct 578531 TGGGTCTGCTTTGTAGGAATAGTAGTGTTGCGTTTAATCAAGGCAGTCATCACACCACCA 578472 Query 281678 GCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTT 281737 || || || | || || || || || | |||||||| || | || | ||| | || Sbjct 578471 GCCGTCTCAATGCCCAGTGACAGTGGTGCGACATCAAGGAGCAGAAGGTCTTGCACATTC 578412 Query 281738 TCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 ||| | | ||| | || || || || || | ||||||||| || || ||||||||| Sbjct 578411 TCAGACTTGTCACCCATCAGGATTGCAGCCTGCACAGCAGCACCGTAAGCCACAGCTTCA 578352 Query 281798 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGTTGTCT 281856 ||||| || | | ||| || || | ||| |||||||| || | || | || || | Sbjct 578351 TCAGGGTTGATACTTTTGTTGAGCTCTTTGCCATTGAAGAAGTCCTGTAGCAACTTCT-G 578293 Query 281857 TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 281916 | |||||| ||||| | || || ||||| || ||||| |||| | ||| ||| || Sbjct 578292 GATCTTAGGGATACGGGTGGAGCCGCCAACCAACACAATCTCATTGATCTGCCCTTTGTC 578233 Query 281917 CAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGA 281976 || || | ||| | | || || || || ||||| | | || | || | Sbjct 578232 GAGCTTGGCATCACGCAGGGCCTTCTCCACAGGCTCAAGGGTGCCACGGAAAAGATCAGC 578173 Query 281977 ACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAAC 282034 | ||||| || || || | || || || | || || ||||| || || ||| Sbjct 578172 ATTGAGTTCCTCAAAGCGGGCACGGGT--GATGGATGTGTAGAAGTCAATGCCATCAAAC 578115 Query 282035 AAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCA 282094 || || |||| ||||| | || ||| || || || || | ||| || || | |||| Sbjct 578114 AAGGAGTCAATCTCAATAGAAGCTTGGGTGGAGGAGCTGAGGGTACGCTTGGCCCTTTCA 578055 Query 282095 CATGCTGTCCTTAGTCTTCGTAAGG--CTTTTGCTGATTGATTCAA-ATCTGTTTTATAT 282151 || ||||| | || | ||| | | || ||| || | ||| || |||| Sbjct 578054 CAGGCTGTACGGAGCCGTCGAACTGCCCTCTTGTTGCCAG---CAATGTCACGCTTATGC 577998 Query 282152 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 282211 || | |||||| || || ||| | | || | || || ||||| || || || ||| Sbjct 577997 TTGCGCTTGAACTCCTCCACAAAGTGGCTCACCATGCGGTTGTCAAAGTCCTCGCCACCC 577938 Query 282212 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 282271 | | ||||| |||| |||| | | || | || | |||||||||| | ||| | Sbjct 577937 AGGTGAGTATCACCTGCTGTAGATTTCACCTCAAAGATGCCATCTTCAATGGTCAAGATC 577878 Query 282272 GTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTC----TTTGTC 282327 | |||||| ||| |||||||||| ||||| || ||||||||| | || | | Sbjct 577877 GAGACATCAAAGGTGCCACCACCCAAGTCAAAGATCAGTACATTCTTCTCACCAGCTCTA 577818 Query 282328 TTG--GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 282385 || || ||||| | |||||| |||| ||||||||||| || |||||||| || | | Sbjct 577817 CTGCCTTTCTTATCCAAACCATAGGCAATGGCAGCAGCAGTGGGCTCATTAATGATGCGC 577758 Query 282386 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 282445 | || || || || | || | || ||||| || |||||||| | || || || || Sbjct 577757 AGGACGTTGAGGCCCGTGATGGTGCCAGCATCCTTGGTGGCTTGGCGCTGGGAGTCATTG 577698 Query 282446 AAATATGCAGGAACAGTAATAACGGCA-TCTGTTACTTCTTTTCCAATATAAGCGCTTGC 282504 || || ||||| || || || || ||| |||| |||| ||| | |||||| || Sbjct 577697 AAGTAGGCAGGCACGGTGATGACAGCACTCTG-GACTTTGCGTCCCAGATAAGCCTCGGC 577639 Query 282505 TGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTG-CTTGG 282563 ||| |||||| || | | | ||| || ||||| | || || ||| | | |||| Sbjct 577638 AATTTCTTTCATCTTTGTCAGCACCATGGAAGAAATCTCCTCAGG-GAAGAAGGTCTTGT 577580 Query 282564 ATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATG 282623 || | || || | | | || || || || | | || || | Sbjct 577579 GCTCTCCCTTGTACTCGACCTGCACCTTGGGCTTCCCGCCTTCACTCACCACACGGAAAG 577520 Query 282624 GCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTT 282683 |||| | ||||||||| || || || | | || | || | | || || | || | Sbjct 577519 GCCAGTGTTTCATATCGGACTGCACGGTGGGATCGTCGAATTTGCGGCCGATGAGGCGCT 577460 Query 282684 TTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAA 282743 | ||||| || || || ||| | ||||| | || | || | |||||||||||||| | Sbjct 577459 TGGCATCGAAGATGGTGTTGTTGGGATTCATCGCCACCTGGTTCTTGGCTGCATCTCCGA 577400 Query 282744 TCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCAT 282803 | || | || || || || || | ||||| ||||| ||||| || ||||| || | Sbjct 577399 TGAGGCGCTCGGTGTCCGTGAAGGCCACATAGCTGGGAGTGGTGCGGTTGCCTTGGTCGT 577340 Query 282804 TCGCAATAATTTCAACTTTACC 282825 | || || || || ||||| || Sbjct 577339 TGGCGATGATCTCCACTTTCCC 577318 >seq119 Length=3366018 Score = 158 bits (174), Expect = 9e-33 Identities = 457/695 (66%), Gaps = 9/695 (1%) Strand=Plus/Plus Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 ||||| ||||| || || || ||||| | || | || | ||| | | |||| || Sbjct 3317785 CGATTGTCAAAGTCCTCGCCACCCAAGTGGGTGTCCCCGGCCGTTGACTTGACTTCAAAG 3317844 Query 282248 AGTCCATCTTCAA--GAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAA 282305 | |||||||||| | || | ||| || ||| ||| || || || | ||||| | Sbjct 3317845 ATGCCATCTTCAATGGTGAGGATGGAG--ACGTCAAAGGTGCCGCCGCCAAGGTCAAAGA 3317902 Query 282306 TAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAG 282365 | | ||||| | ||| || ||||| || | ||||| |||||||||| |||| Sbjct 3317903 TCAACACATTTCTCTCTGCACCTACTTTTTTGTCCTGTCCATAAGCAAAAGCAGTGGCAG 3317962 Query 282366 TTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGG 282425 |||| |||||||| ||| | |||||||| |||||||| |||| |||||||| || Sbjct 3317963 TTGGCTCATTAATGATTTGGAGCACATTAAGGCCAGCAATGGTTCCAGCATCTTTTGTCA 3318022 Query 282426 CTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT-TCT 282484 | || ||| || || || ||||| || || || |||| ||| | || ||| ||| Sbjct 3318023 CCTGGTGTTGGGAGTCATTGAAATAAGCTGGGACTGTAACCGTGGCGTTAGTAACTGTCT 3318082 Query 282485 TTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGT 282544 || |||| || || | | | | |||||||| ||| | || || || || | Sbjct 3318083 TTCCCAAG-TACGCCTCGGTTATCTTGTTCATTTTGGTTAGCACTATAGAGGATATCTCC 3318141 Query 282545 TCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 282604 || ||| || | ||| | ||| || || || | | | ||| || | || Sbjct 3318142 TCGGGATAAAAGCTCTTCGTTTCTCCTTTGTACTCCACCTGGACTTTTGGCCTACCATCA 3318201 Query 282605 ACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAA 282664 |||| | ||| | || ||||| | ||||||||| || || ||| | || ||| Sbjct 3318202 TCATTCACAACAGTGAAAGGCCAGTGTTTCATATCAGACTGGACAACAGCATAATCAAA- 3318260 Query 282665 TCT-CTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTG 282723 ||| | |||||| | ||||||||||||| | | || || || || | || |||| Sbjct 3318261 TCTGCGACCAATCAGGTGTTTTGCATCAAATACCATGTTTGTGGGGTTCATGGCCACTTG 3318320 Query 282724 ATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGT 282783 | || || ||||||||||| || ||||| ||||| || | ||| || ||| || Sbjct 3318321 GTTATTTGCAGCATCTCCAATGAGCCTCTCTGTATCTGT-AAGGCAACGTAGCCTGGCGT 3318379 Query 282784 TGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTAC 282843 || | ||||| |||||||| ||||| ||||| || || |||| || | |||| || Sbjct 3318380 GGTCCTGTTACCCTGATCATTGGCAATGATTTCCACCTTGCCATGCTGAAAAGCACCCAC 3318439 Query 282844 ACAACTAAAAGTTGTTCCTAAATCAATACCAATAG 282878 ||| | || || || | |||||| |||| || Sbjct 3318440 ACAGGAGTAGGTAGTGCCAAGATCAATGCCAACAG 3318474 Score = 93.3 bits (102), Expect = 3e-13 Identities = 189/277 (68%), Gaps = 3/277 (1%) Strand=Plus/Plus Query 282603 CAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAA 282662 || |||| | ||| | || ||||| | ||||||||| || || ||| | || || Sbjct 3319770 CATCATTCACAACAGTGAAAGGCCAGTGTTTCATATCAGACTGGACAACAGCATAATCAA 3319829 Query 282663 AATCT-CTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCT 282721 | ||| | |||||| | ||||||||||||| | | || || || || | || || Sbjct 3319830 A-TCTGCGACCAATCAGGTGTTTTGCATCAAATACCATGTTTGTGGGGTTCATGGCCACT 3319888 Query 282722 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 282781 || | || || ||||||||||| || ||||| ||||| || | ||| || ||| Sbjct 3319889 TGGTTATTTGCAGCATCTCCAATGAGCCTCTCTGTATCTGT-AAGGCAACGTAGCCTGGC 3319947 Query 282782 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCT 282841 || || | ||||| |||||||| ||||| ||||| || || |||| || | |||| Sbjct 3319948 GTGGTCCTGTTACCCTGATCATTGGCAATGATTTCCACCTTGCCATGCTGAAAAGCACCC 3320007 Query 282842 ACACAACTAAAAGTTGTTCCTAAATCAATACCAATAG 282878 ||||| | || || || | |||||| |||| || Sbjct 3320008 ACACAGGAGTAGGTAGTGCCAAGATCAATGCCAACAG 3320044 >seq7 Length=9770732 Score = 105 bits (116), Expect = 5e-17 Identities = 221/327 (68%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 || || || || ||||||||||||||||| | | | || |||| ||| || ||||| Sbjct 4205695 GCTCCGTAAGCTACAGCTTCATCAGGATTGATGCTCTTGTTGAGTTCTTTGCCGTTGAAG 4205636 Query 281837 AAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 || | ||| || | ||| | || || || || | || || ||||| | ||||| Sbjct 4205635 AAGTCCTGAAGCAGCT-TCTGGATTTTGGGGATTCGGGTGGACCCGCCAACCAGGACAAT 4205577 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 ||||| ||||| |||||||| || || | |||| | |||| || ||||| || || Sbjct 4205576 GTCATGTACCTGAGATTTATCGAGCTTCGCATCCCGCAGGGCTTTCTCCACGGGATCCAG 4205517 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 282015 | | | |||||||| | | || ||||| || ||||||||||| | | || Sbjct 4205516 AGTGCCACGGAACAAGTCAGCATTCAGCTCTTCAAAGCGAGCTCTAGTAATTGAGGTATA 4205457 Query 282016 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 282075 | ||||| || ||| ||| ||||| | |||||| | | ||||| ||| || || Sbjct 4205456 GAAGTCAATGCCCTCGTACAGGGAATCGATTTCAATACTGGCCTGAGTGCTAGAGGAAAG 4205397 Query 282076 TGCACGTTTAGCACGTTCACATGCTGT 282102 | ||| || ||||| ||||| || || Sbjct 4205396 GGTACGCTTCGCACGCTCACAGGCAGT 4205370 >seq418 Length=1241430 Score = 102 bits (112), Expect = 6e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 |||||||| ||||||||||| || ||||||||||||||||| ||| | ||||||||| Sbjct 927311 TGTACCCTGATTTTGACAGAAGGTGATTCAGCTAAAACATTGGCTGTTTCTGGCCTTGGA 927252 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 ||| | |||||||| | | |||||| ||||| || | ||||| | | |||||| | Sbjct 927251 GTTGTGGGAAGAGACAAATTTGGAGTGTTCCCCCTGCGTGGAAAGATGCTCAATGTTCGT 927192 Query 400417 GATGCT 400422 || ||| Sbjct 927191 GAAGCT 927186 >seq528 Length=914075 Score = 91.5 bits (100), Expect = 1e-12 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 131178 TAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTC 131237 ||||||| || |||| || || ||||| || |||||| | ||| | || ||||||| Sbjct 522629 TAGTAGCTACTGTAGCCTTCGGAATGGGCATCAATAAAGCAGATATCAGGACAGTTATTC 522688 Query 131238 ATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTG 131297 | || || ||||| ||| | || ||| ||||| || |||||||| || |||||||||| Sbjct 522689 ACTATGGTGCTCCAAAGGAAATGGAATCATATTACCAGGAAATTGGAAGGGCAGGTCGTG 522748 Query 131298 ATGGA 131302 ||||| Sbjct 522749 ATGGA 522753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739955382203274