Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq548 107 3e-18 seq20 107 3e-18 seq102 105 9e-18 seq604 104 3e-17 seq348 104 3e-17 seq33 91.5 2e-13 >seq548 Length=871607 Score = 107 bits (118), Expect = 3e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 325033 TTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 325092 Query 8717 CCCCGACGAGGAGCAGA 8733 |||||||| |||| ||| Sbjct 325093 CCCCGACGGGGAGAAGA 325109 Score = 105 bits (116), Expect = 9e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 291657 TTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 291716 Query 8717 CCCCGACGAGGAGCAG 8732 |||||||| |||| || Sbjct 291717 CCCCGACGGGGAGAAG 291732 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 322311 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 322370 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 322371 CCCGACGGGGAG 322382 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 291658 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 291717 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 291718 CCCGACGGGGAG 291729 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 322311 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 322370 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 322371 CCCGACGGGGAG 322382 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 325034 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 325093 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 325094 CCCGACGGGGAG 325105 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 291729 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 291670 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 291669 TACTAACGAGGA 291658 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 322382 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 322323 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 322322 TACTAACGAGGA 322311 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 325105 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 325046 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 325045 TACTAACGAGGA 325034 >seq20 Length=6710416 Score = 107 bits (118), Expect = 3e-18 Identities = 73/81 (90%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 11721 GTAACCCAGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGG 11779 |||| ||| |||||||||||||||||||| |||| |||| ||||| | |||||||||||| Sbjct 454944 GTAAGCCACTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGG 454885 Query 11780 GTTCGATTCCCCGACGAGGAG 11800 |||||||||||||||| |||| Sbjct 454884 GTTCGATTCCCCGACGGGGAG 454864 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 454935 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 454876 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 454875 CCCGACGGGGAG 454864 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 454864 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 454923 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 454924 TACTAACGAGGA 454935 >seq102 Length=3625303 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 3120792 TTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 3120851 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 3120852 CCCCGACGGGGAG 3120864 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 3122446 TTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 3122505 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 3122506 CCCCGACGGGGAG 3122518 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 3120793 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 3120852 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 3120853 CCCGACGGGGAGG 3120865 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 3122447 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 3122506 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 3122507 CCCGACGGGGAGG 3122519 Score = 96.9 bits (106), Expect = 5e-15 Identities = 69/78 (88%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 139348 CACAAC-TCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAA 139406 |||||| ||| ||||||||| |||||||||||||||||| | |||| |||||||| | | Sbjct 3120870 CACAACCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTA 3120811 Query 139407 CCACTATACTAACGAGGA 139424 |||||||||||||||||| Sbjct 3120810 CCACTATACTAACGAGGA 3120793 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 3122518 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 3122459 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 3122458 TACTAACGAGGA 3122447 >seq604 Length=741506 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 467457 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 467516 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 467517 CCCGACGGGGAG 467528 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 467457 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 467516 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 467517 CCCGACGGGGAG 467528 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 467528 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 467469 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 467468 TACTAACGAGGA 467457 >seq348 Length=1506948 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 644471 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 644412 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 644411 CCCGACGGGGAG 644400 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 644471 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 644412 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 644411 CCCGACGGGGAG 644400 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 644400 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 644459 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 644460 TACTAACGAGGA 644471 >seq33 Length=5880253 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 || |||||||||||||||| |||| | || ||||| | ||||||||||||||||||||| Sbjct 2497377 TCTTCGTTAGTATAGTGGTGCGTATCCGCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2497318 Query 8718 CCCGACGAGGAGC 8730 ||||||| ||||| Sbjct 2497317 CCCGACGGGGAGC 2497305 Score = 86.0 bits (94), Expect = 8e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 || |||||||||||||||| |||| | || ||||| | ||||||||||||||||||||| Sbjct 2497377 TCTTCGTTAGTATAGTGGTGCGTATCCGCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2497318 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 2497317 CCCGACGGGGAG 2497306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652732600460560