Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq63 194 2e-44 seq89 167 3e-36 seq1 95.1 1e-14 >seq63 Length=4466547 Score = 194 bits (214), Expect = 2e-44 Identities = 614/931 (66%), Gaps = 28/931 (3%) Strand=Plus/Minus Query 162064 GACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCG 162123 ||||| || || |||||||| || || ||| ||| ||| ||| | |||| Sbjct 2142688 GACTTGTGGCGCAGATACTCTTCCAGGCACAGGATGGCGTTGTTGTCGACCTGGGGATCG 2142629 Query 162124 AACTTGTTCGCGAACAGGTGATGC-GAGTTCTTCAATATCCAATTAAGATCCCCCGATCC 162182 |||||||| || || ||||| ||| ||| | ||||| | || ||||| || Sbjct 2142628 AACTTGTTAGCAAAGAGGTGGTGCTGAGCG----AGCATCCAGTGGAGGTCCCCTACCCC 2142573 Query 162183 GAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTC 162242 | | ||||| || | |||| | || || |||| || |||||| ||||||| | | Sbjct 2142572 GTAGACGCAGACCGCCCGCTGGGAGACCCCCGTGCAGGGGGGATACGGGGCCCCCTTGCT 2142513 Query 162243 CACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGT 162302 || || || ||| ||| |||||| || ||||| | || || | |||||| | | Sbjct 2142512 GACGTCTCCTTCGCTGTAAACCCACTTCACCAACCTGGCAATGGCGTTCATGTCTGTGAG 2142453 Query 162303 GTCGTACTTGTACACTGAC-GGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAG 162361 ||| | ||| || ||| || || | ||| ||||| || |||| | |||| ||||| Sbjct 2142452 GTCAAATTTGG-CATTGAAAGGGACTGATCCTGGAACTCCGGGCATCCGATGTAAAGTAG 2142394 Query 162362 CCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCC----CTG 162417 ||||||||||||| || ||||| || || || || ||||||||| || || ||| Sbjct 2142393 CCCACAGGTGTTCATCCGGACTGTAAGTGTCTTTGCACCACTCCAGGAGCTGTTTTGCTG 2142334 Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 | | | | ||| | ||| ||| || || | |||||| || | | ||| ||| | Sbjct 2142333 TCGGGTCT-TCGAAAAGA-TGTTGGA--CGAACTCCCTGGTGACCACGATGTAGGCGTTC 2142278 Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCT-TGACCCGTGTTGACTAC 162536 || | |||| ||| || ||| |||||| || ||| || | | | | ||| || Sbjct 2142277 CCGGTGAACATGGGGGAGCTCTGAGGTGGGGGCCTCTTCTCTGTGGCGCTT-TGGACCAC 2142219 Query 162537 C-ATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGT 162595 | ||| || ||| | ||| | || |||| | | | ||| | || || || Sbjct 2142218 GGAATCCGTC-ACGTCGTGGTGA-TATT--TCCAGCGGTTCTGCTTCCCTGTCGATGGCC 2142163 Query 162596 GTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655 || | ||| | |||| | ||| ||| || ||| | || |||||| | Sbjct 2142162 TCTCTGACTCCATGTTGTTCCTCCCCTTCAAAAGTTTTAGCCTTTGGACGATCTCTGCGT 2142103 Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGA 162715 ||||||| | |||||||||||| |||||| ||| | | || ||||| ||| || Sbjct 2142102 TGGTCTTGATGGGAAAGTCGGTCCCGCAGGTATTCAGGAGGTACTTCCAGGGGACGTTGC 2142043 Query 162716 GTCCGTAC-AGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774 |||| | || || | | ||||||||||| || || || || ||| || |||||| Sbjct 2142042 -TCCGAAGGAGGTCTTCCATGCAGTTCAGATCCGCTTGCACCCGGGACCAAGAGGCGTAC 2141984 Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834 || || ||||| || | ||| | |||||| || || || || || | || || Sbjct 2141983 ACCACCGTCTCCTGTCTGGAGGCCAGAAAGACGTTCTCAAAGCAGGAGGCGATGGCCTGG 2141924 Query 162835 ACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCT 162892 || || | ||| | | |||| | ||| | || ||||| |||||||| | |||| Sbjct 2141923 ACCGCTTCTTGGAAGGCTTTGGGT--GACTTCTTGTCCACGTGGACGCAGTAGATGTTCT 2141866 Query 162893 GAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGA 162952 | ||||| ||||||||||| | | |||||||||||||||||||| | ||| ||||| | Sbjct 2141865 GGGGGGCATAGATGGCCCTTAAGAGCCTCTCGAACATCTCTATCTTTTCGTGGACCACCA 2141806 Query 162953 TAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 | ||||| || |||||||| || ||||||| Sbjct 2141805 TGGAATAAGCGATGGGGAAGTCCTCCTCCTC 2141775 >seq89 Length=3767728 Score = 167 bits (184), Expect = 3e-36 Identities = 639/995 (64%), Gaps = 15/995 (2%) Strand=Plus/Plus Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126 || || || |||||||| || | ||||| || || || ||| || || ||| Sbjct 2533297 TTGTGCCGTAGATACTCCTCCAAGCACTGAACTGCAAAGGGGTCAATGTCAGTGTCAAAC 2533356 Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186 ||||| || || | ||| ||| ||| || ||||| || | || ||| ||| || Sbjct 2533357 TTGTTGGCAAAGAAGTGGTGC---TTCCGCAGCATCCAGTTCAAGTCTCCCACTCCAAAG 2533413 Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246 || ||||| || || | || || || ||||| || || || | ||||| | |||| Sbjct 2533414 ACACACACTGAACGGATATGAACTCCACTGCAAGGTGGGTAGGGAGCCCCCTTTGACACA 2533473 Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306 || ||||| | || ||||||||||| ||||| | | ||| | |||||| ||| || Sbjct 2533474 TCTCCCTCAAAATAATGCCACTTAACAAACCTGGCAAGAGCATTCATGTCAGAGACATCA 2533533 Query 162307 TACTTGTACACTGAC-GGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365 || || | ||||| | || || || ||||| || | || | || ||| | ||||||||| Sbjct 2533534 TATTTCT-CACTGGCAGGGACTGCACCAGGGACTTCAGGAATTCGCTGAATAGTAGCCCA 2533592 Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425 | || ||| |||||||| || || || || | ||| || | || | || | | Sbjct 2533593 TAAGTATTCATCTGGACTGTATGTGTCTTTTGCCCATTCTACAAAAGCAAGGATTCTGCT 2533652 Query 162426 ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACC--AGAA 162483 || | | | || || | ||| | || | |||||| || || || |||| Sbjct 2533653 GTCCTCCAATACATACTCTACAAACCTCCTACTAACCACAAAGTAGGCACTGCCAGAGAA 2533712 Query 162484 AACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCC 162543 || | ||||| | | ||| || ||| ||||| ||| |||| ||| | | Sbjct 2533713 AATAGGGGTA--CTCAGAGGTGGTCGCTGCTTGTCCATTCCCATGTTCTTGACCTTACTA 2533770 Query 162544 TCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTTCGGTC 162603 || || || | || |||| |||| | || |||| | | || | | || || Sbjct 2533771 TCAACAACTTCATGATGCTTCTTCCATCGTACCTCCTTATTTGAAGGCATTTTCTCTGTT 2533830 Query 162604 TCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTA 162663 || | ||| || |||| | ||| |||| || || ||||| | ||||||||| Sbjct 2533831 TCCAAACTATTTTCACCCTTGAGGGCTTTCAACTTCTCTACTATCTCCTGGTTGGTCTTA 2533890 Query 162664 AGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTAC 162723 | || || || |||| || ||||| || | || ||| | ||| | ||| Sbjct 2533891 ATAGGGAAATCCATGCCACAAAGATTGATTAGGTACGCCCAGCTTTTGCTCCTCCTGTAG 2533950 Query 162724 AGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTC 162783 ||||||| | ||||| || || ||||| || | ||||| || || || || || ||| Sbjct 2533951 AGATCCTTCATGCAGTTGAGGTCCGCCTGTACTCTGCTCCATGAGGCATAAACTACACTC 2534010 Query 162784 TCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGT 162843 |||||| | |||| | || |||||||| ||||| || | || || | || | ||| Sbjct 2534011 TCCAACTGACTGGCAATGAAAACATTGTCAAAACATGAGGCAATGCCTTTAACTG-CAGC 2534069 Query 162844 GAGAACA---TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCG 162900 |||| | || || | ||| |||| || || | |||||| ||||||||| || Sbjct 2534070 CAGAAAAGATTCTGG--GGACTTCTTATCAACATGAATGCAGTAATAATTCTGAGGAGCA 2534127 Query 162901 TAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATAC 162960 ||||| | |||| | || || | ||| || || || || || || || || ||||| Sbjct 2534128 TAGATTGATCTCAAAAGCCTATCAAGCATGTCAATTTTTTGATGAACTACAATTGAATAT 2534187 Query 162961 GCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGCGGTCCCTC 163020 || || || ||||| || || || || ||||| | ||| || || || | | Sbjct 2534188 GCAATAGGAAACTCTGCTTCTTCTTTGCTTAGAGATTCCATAATATATTTCCGTCTCTTA 2534247 Query 163021 ACAAACGCCGCACAGTCCTCCGTCATGTTAACGTA 163055 | ||| | |||||||| |||||||||| ||| Sbjct 2534248 ATAAAAGAGGCACAGTCTGTTGTCATGTTAATGTA 2534282 >seq1 Length=14681335 Score = 95.1 bits (104), Expect = 1e-14 Identities = 203/301 (67%), Gaps = 13/301 (4%) Strand=Plus/Plus Query 177339 CCATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTT 177398 ||||| ||||| |||||||| || || || | || || | || |||||||| || | | Sbjct 6509344 CCATAAGGCACCTGAATATCTGAATCACGACGATAAGTGAGAGTCAGATTGAAGAGATGT 6509403 Query 177399 TCTATACC----TTGTTTGAAGGGGCTGTTACTGGGCGATTCTAAGTTCATCCATATCCA 177454 || || || || | || || | |||| |||||||| ||||||||||| ||||| Sbjct 6509404 TCAATTCCACTCTTTTGTGGAGTGTGTGTT----GGCGATTCCAAGTTCATCCAGATCCA 6509459 Query 177455 CTTTTGAAAGGTTGGTCTGGGTTCCGTAGGTAGAGTATAAGGATCTATACTTATCTCTCT 177514 ||| ||||| | ||| || |||| | ||||| || |||| ||| || ||||| Sbjct 6509460 CTTCTGAAATGGTGGCCTAGGTTGCTGAGGTAAGTTAGTCAGATCCCAACTGATATCTCT 6509519 Query 177515 GTGGTGAAAGACTACGGCATTGGCTTTGTAATAAACAGATCTGTCTACGGTAACGTGACA 177574 |||||| | | ||||||| || || ||| | | || || || | || || Sbjct 6509520 GTGGTGGATAAGAACGGCATGGGACCGGTTATATAATGTTCGATCAGTAGTCAGATGGCA 6509579 Query 177575 CGCACGTATGTTAAATCTGGAGCTACACGCATTT-AGATCAAATGGGTGGCCGTAGGGCC 177633 | || | ||||||||| | | || | |||| |||||||| | ||||| | |||| Sbjct 6509580 CCCATGGATGTTAAATGTTGGGC----AGAATTTCAGATCAAAAGTCTGGCCAAATGGCC 6509635 Query 177634 A 177634 | Sbjct 6509636 A 6509636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578332589230400