Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq102 89.7 5e-13 seq148 87.8 2e-12 seq530 82.4 7e-11 >seq102 Length=3625303 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| | ||||| |||||| ||||| || |||| | Sbjct 3125434 GACTCCTTCTGGATGTTGTAGTCGGAAAGCGTACGGCCATCTTCCAGCTGCTTGCCGGCA 3125375 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| |||||||| || |||||||| || || ||||| || | Sbjct 3125374 AAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTGACA 3125315 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | |||||||| || | || | || || ||||| || ||||| Sbjct 3125314 TTCTCAATGGTGTCACTTGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTTTTC 3125255 Query 132110 ATGAAAATCTGCAT 132123 | ||||||||||| Sbjct 3125254 ACAAAAATCTGCAT 3125241 >seq148 Length=2989754 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/114 (79%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 147489 CTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCC 147548 ||||| ||| ||| |||||| |||||| |||| ||| ||||||||||| || || || Sbjct 2372620 CTCTT-GGC-TCG-TGTACTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATTGTCCC 2372564 Query 147549 CAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 || || ||||| ||||| ||||| ||||| | ||| ||| |||||||||| || Sbjct 2372563 CAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTATGG 2372510 >seq530 Length=912484 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| |||| || | | | ||||| || || |||||||||||| | ||| || Sbjct 249112 CAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCG 249053 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || |||| | |||| || | ||| || || || || ||||| || Sbjct 249052 GCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTC 248993 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || || |||| | || | || || |||||||||| || | || Sbjct 248992 TTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGT 248933 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 | || || || ||||| || || | || ||||||||| || Sbjct 248932 GATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGCCT 248890 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| |||| || | | | ||||| || || |||||||||||| | ||| || Sbjct 249340 CAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCG 249281 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || |||| | |||| || | ||| || || || || ||||| || Sbjct 249280 GCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTC 249221 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || || |||| | || | || || |||||||||| || | || Sbjct 249220 TTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGT 249161 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 | || || || ||||| || || | || ||||||||| || Sbjct 249160 GATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGCCT 249118 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| |||| || | | | ||||| || || |||||||||||| | ||| || Sbjct 249568 CAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCG 249509 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || |||| | |||| || | ||| || || || || ||||| || Sbjct 249508 GCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTC 249449 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || || |||| | || | || || |||||||||| || | || Sbjct 249448 TTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGT 249389 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 | || || || ||||| || || | || ||||||||| || Sbjct 249388 GATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGCCT 249346 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| |||| || | | | ||||| || || |||||||||||| | ||| || Sbjct 249796 CAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCG 249737 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || |||| | |||| || | ||| || || || || ||||| || Sbjct 249736 GCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTC 249677 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || || |||| | || | || || |||||||||| || | || Sbjct 249676 TTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGT 249617 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 | || || || ||||| || || | || ||||||||| || Sbjct 249616 GATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGCCT 249574 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| |||| || | | | ||||| || || |||||||||||| | ||| || Sbjct 250024 CAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCG 249965 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || |||| | |||| || | ||| || || || || ||||| || Sbjct 249964 GCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTC 249905 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || || |||| | || | || || |||||||||| || | || Sbjct 249904 TTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGT 249845 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 | || || || ||||| || || | || ||||||||| || Sbjct 249844 GATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGCCT 249802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476529288407640