Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq49 116 5e-21 seq208 91.5 2e-13 >seq49 Length=4988178 Score = 116 bits (128), Expect = 5e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| ||||| | ||| || || || || || || ||||| || || | ||| ||| Sbjct 468619 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGACCCGGCATCAGTCCTCTCTTCTTG 468678 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||||||||| || ||||||| ||||| ||||| || ||||| || | ||||| ||| Sbjct 468679 AGCCAAAATATAGCTGCAAAAGCACCAGAGAAGAAAATTCCTTCAACCGAGGCAAAAGCA 468738 Query 39761 ACAAGTCTCTCTCC 39774 || ||||||||||| Sbjct 468739 ACCAGTCTCTCTCC 468752 >seq208 Length=2424200 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/143 (75%), Gaps = 5/143 (3%) Strand=Plus/Minus Query 39267 TTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATCTT----CTTGTGACATAACTCCC 39322 || |||||||||| ||||||||| ||| || || | |||| ||||| |||||| Sbjct 1740971 TTGTTTAAAAGTCTGCATCTAAAGTGAAAGAGTTGTCATTGGGCTTG-GACATCACTCCC 1740913 Query 39323 ATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATA 39382 || || || || || || || || || || || ||||||||||| |||| ||| ||| Sbjct 1740912 ATCCGCTGATACTCTCCCACACGCTTTTCAAAGAAGTTAGTTTTGCCCTCCAGTGAGATA 1740853 Query 39383 TTTTCCATGAAATCAAACGGATT 39405 || |||||||| ||||| ||||| Sbjct 1740852 TTCTCCATGAAGTCAAATGGATT 1740830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686790746136360