Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq174 109 4e-19 seq208 96.9 3e-15 seq235 87.8 1e-12 >seq174 Length=2756573 Score = 109 bits (120), Expect = 4e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108 ||||| || ||||| |||||| | || ||||| || |||| |||||||||||||| Sbjct 403377 ATGGCTTTACCACCGTGTCATGCTCTTTGCCAGTTCTATGTTTTAAATGGTGAACTGTCT 403436 Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168 ||||| || ||||| | || || ||||||||| |||| || || || ||||| || ||| Sbjct 403437 TGTCAGTTATATCAGCGTTCTGGAGACATGGGATTAGGAGTACCTTTCAACATTGCCAGT 403496 Query 41169 TATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 || | ||||||| | ||||| || || ||||| Sbjct 403497 TACTCATTGCTCACTTCAATGATCGCTCATGTTAC 403531 >seq208 Length=2424200 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 |||||| |||||||| || | ||||||| || ||||| ||||| || || || ||| Sbjct 1737015 CGGTTTAGCCAAGAAGTGCAGGTGACAGAAGCTCGCTGTTTCTATGGTTTCCAGATCGCC 1737074 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 || ||||| || ||||| |||||||||||| | || || ||||| || |||||||| Sbjct 1737075 ATGGAAAACATCCATTCAGAAATGTACAGTTTACTTATTGATACATATATCAAAGA 1737130 Score = 87.8 bits (96), Expect = 1e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||| ||||| || ||||| || ||||||||||| || |||||| |||| Sbjct 1732599 TTTGTCATCTTTCCCATTCAGTACCATGATATCTGGCAAATGTATAAGAAAGCAGAGGCA 1732658 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || ||||||||||| ||||| || Sbjct 1732659 TCCTTTTGGACAGCTGAAGAGGT 1732681 >seq235 Length=2175252 Score = 87.8 bits (96), Expect = 1e-12 Identities = 124/170 (73%), Gaps = 7/170 (4%) Strand=Plus/Minus Query 19534 GGGCGCAAA-AGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCA 19592 ||| ||||| ||| | | ||||| || || | |||||| | || || ||||| || || Sbjct 421528 GGGTGCAAACAGTGGTGTCCACATCATCATCTTCGATGAAATTGATGCCATCTGCAAACA 421469 Query 19593 AAGAGGT--TCTGGTG--TA--AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTC 19646 |||||| | ||| | || | ||| || |||||||| || || || || |||||||| Sbjct 421468 AAGAGGAAGTATGGCGGGTAGCACTGGTGTCCATGACACAGTCGTGAACCAGCTCCTGTC 421409 Query 19647 AAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGA 19696 |||| | || || ||| | || ||||| || ||||| || ||||| |||| Sbjct 421408 AAAAATTGATGGGGTTGAGCAGCTGAACAACATTTTGGTCATTGGTATGA 421359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397389399912745