Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq208 95.1 1e-14 seq15 87.8 2e-12 seq148 86.0 7e-12 >seq208 Length=2424200 Score = 95.1 bits (104), Expect = 1e-14 Identities = 101/131 (77%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| |||| |||||| ||||| | ||| |||||||| | || ||||||||| Sbjct 1738290 TCATCTCTGCTGATCAGTTCATTGGAAAAAGTAAGCCCAGGCATTAACCCTCGCTTCTTC 1738231 Query 74832 AACCAAAAGAT-GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890 | ||||||||| | | || || ||||| ||||| || ||||| ||| || ||||| Sbjct 1738230 AGCCAAAAGATAGACGCA-AAAGAACCGGAAAAGAATATTCCTTCCACAGCTGCGAAGGC 1738172 Query 74891 GACAAGGCGTT 74901 ||| | |||| Sbjct 1738171 GACTACTCGTT 1738161 >seq15 Length=7401090 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 |||||| || ||||||| ||||||||||| ||||||||| || | ||||| || || Sbjct 4349690 AGTGAAGATATAACGAGGACTTGCAGCATCTTTGCCACCATGCAGCCTAGTACCAAACTG 4349749 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| | |||| | | ||| | || ||| || |||||||| |||||||||||||| Sbjct 4349750 ACCAATAGGCTGTAGCAAGTTGACATTATTGCTTCCAACAAAGTTCTGAGCCAAGTTGAC 4349809 Query 117424 AATCGT 117429 ||| || Sbjct 4349810 AATAGT 4349815 >seq148 Length=2989754 Score = 86.0 bits (94), Expect = 7e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 ||| || ||||| || |||||||| || |||||||| || ||| |||||||||||||| | Sbjct 2376352 CCTCCTGGTGGCCCCGATGCCAACAGCTTCGACGGCACAAATCTTGGGCAACAACGAGTC 2376411 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTT 55606 | || || ||||| | |||||||||| |||||| || | || |||||| Sbjct 2376412 CATTGAACCCTACACCAGCAACATCTACACACGCCGGGTTCTCTCTGGAGAGTTT 2376466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547121954090200