Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq102 194 2e-44 seq530 154 2e-32 seq15 86.0 7e-12 >seq102 Length=3625303 Score = 194 bits (214), Expect = 2e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | ||||||||||| || ||||| ||||| ||| | || Sbjct 3125469 ATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACTCTGGAGGTGGAGCCGAGT 3125528 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | ||||||||||| ||||||||||| || ||||| ||||||||| Sbjct 3125529 GACACCATTGAAAATGTCAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 3125588 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| |||||||| | ||||| || Sbjct 3125589 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTACAAC 3125648 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| ||||||| | ||||| Sbjct 3125649 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGAGGTGG 3125695 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || || || || |||||||| || || | ||||| ||| || | Sbjct 3125240 AATGCAGATTTTTGTGAAAACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAGCCAAG 3125299 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | ||||||||||| ||||||||||| || ||||| ||||| || Sbjct 3125300 TGACACCATTGAGAATGTCAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCA 3125359 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || ||||| || ||||| || || |||| ||||| || | ||||| || Sbjct 3125360 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACGCTTTCCGACTACAA 3125419 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| ||||||| | ||||| Sbjct 3125420 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGAGGTGG 3125467 Score = 167 bits (184), Expect = 3e-36 Identities = 182/241 (76%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || |||||||| || || | ||||| ||| | || Sbjct 3125697 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCGAGT 3125756 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||||||||| ||||||||||| || |||||||| |||||| Sbjct 3125757 GACACCATTGAGAATGTCAAGGCTAAAATCCAGGACAAGGAAGGTATTCCTCCTGACCAG 3125816 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 3125817 CAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 3125876 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAAAGT 27645 |||| ||||| ||||| || || || ||| |||| || | ||||| |||||||| Sbjct 3125877 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGCCTGAGGGGTGG---TATTTAAAGT 3125933 Query 27646 T 27646 | Sbjct 3125934 T 3125934 >seq530 Length=912484 Score = 154 bits (170), Expect = 2e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || ||||||||||| || || || ||||| || | || Sbjct 250034 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAACCGAGT 250093 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || |||||||| ||||| ||||| || |||||| Sbjct 250094 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGACCAG 250153 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 250154 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 250213 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || ||| |||| || Sbjct 250214 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCT 250251 >seq15 Length=7401090 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 || ||||||||| | |||||||||||||| || ||||| | ||||| || |||| Sbjct 4349815 ACTATTGTCAACTTGGCTCAGAACTTTGTTGGAAGCAATAATGTCAACTTGCTACAGCCT 4349756 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| || |||| |||||||| |||||||| || | ||||| ||| Sbjct 4349755 ATTGGTCAGTTTGGTACTAGGCTGCATGGTGGCAAAGATGCTGCAAGTCCTCGTTATATC 4349696 Query 32245 TTCAC 32249 ||||| Sbjct 4349695 TTCAC 4349691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570212385028880