Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq102 141 2e-28 seq530 125 2e-23 seq439 86.0 1e-11 >seq102 Length=3625303 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||||||||| ||||| || || |||| ||||| |||| | || | ||||| Sbjct 3125909 CAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 3125850 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || ||||| || ||||||||||||||||| Sbjct 3125849 TTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATACCTTCCTTGTC 3125790 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| || ||| ||| || |||||||| | ||||| || || ||||| || Sbjct 3125789 CTGGATTTTAGCCTTGACATTCTCAATGGTGTCACTCGGCTCCACCTCCAAGGTGATGGT 3125730 Query 225681 CTTGCCCGTCAAAGTTTT 225698 |||||| ||||| || || Sbjct 3125729 CTTGCCAGTCAAGGTCTT 3125712 Score = 132 bits (146), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||||||||| ||||| || || |||| ||||| |||| | || | ||||| Sbjct 3125453 CAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTACGGCCATC 3125394 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || || || || ||||| ||||||||||| Sbjct 3125393 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 3125334 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| || ||| ||| || |||||||| | ||||| || || ||||| || Sbjct 3125333 CTGGATTTTAGCCTTGACATTCTCAATGGTGTCACTTGGCTCCACCTCCAAGGTGATGGT 3125274 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| || | ||||| | || | |||||||| Sbjct 3125273 CTTGCCAGTGAGGGTTTTCACAAAAATCTGCATTTT 3125238 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||||||||| ||||| || || |||| ||||| || | | || | ||||| Sbjct 3125681 CAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCATC 3125622 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || ||||| || ||||| ||||||||||| Sbjct 3125621 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 3125562 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| || ||| ||| ||| |||||||| | ||||| || | ||||| || Sbjct 3125561 CTGGATTTTAGCCTTGACATTTTCAATGGTGTCACTCGGCTCCACCTCCAGAGTGATGGT 3125502 Query 225681 CTTGCCCGTCAAAGTTTT 225698 |||||| ||||| || || Sbjct 3125501 CTTGCCGGTCAAGGTCTT 3125484 >seq530 Length=912484 Score = 125 bits (138), Expect = 2e-23 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| |||||||| ||||| || || |||| ||||| |||| | || | ||||| Sbjct 248650 CAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 248591 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || ||||| || ||||| || || ||||| Sbjct 248590 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTC 248531 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| || || |||||||| | ||||| || | ||||| || Sbjct 248530 CTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTCGGCTCCACCTCCAGGGTGATGGT 248471 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTA 225717 ||||||||||| || || | || | ||||||||| Sbjct 248470 CTTGCCCGTCAGGGTCTTCACAAAGATCTGCATTTTA 248434 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| |||||||| ||||| || || |||| ||||| |||| | || | ||||| Sbjct 249106 CAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 249047 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || ||||| || ||||| || || ||||| Sbjct 249046 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTC 248987 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| || |||||||| | ||||| || | ||||| || Sbjct 248986 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATGGT 248927 Query 225681 CTTGCCCGTCA 225691 ||||||||||| Sbjct 248926 CTTGCCCGTCA 248916 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| |||||||| ||||| || || |||| ||||| |||| | || | ||||| Sbjct 249334 CAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 249275 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || ||||| || ||||| || || ||||| Sbjct 249274 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTC 249215 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| || |||||||| | ||||| || | ||||| || Sbjct 249214 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATGGT 249155 Query 225681 CTTGCCCGTCA 225691 ||||||||||| Sbjct 249154 CTTGCCCGTCA 249144 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| |||||||| ||||| || || |||| ||||| |||| | || | ||||| Sbjct 249562 CAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 249503 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || ||||| || ||||| || || ||||| Sbjct 249502 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTC 249443 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| || |||||||| | ||||| || | ||||| || Sbjct 249442 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATGGT 249383 Query 225681 CTTGCCCGTCA 225691 ||||||||||| Sbjct 249382 CTTGCCCGTCA 249372 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| |||||||| ||||| || || |||| ||||| |||| | || | ||||| Sbjct 249790 CAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 249731 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || ||||| || ||||| || || ||||| Sbjct 249730 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTC 249671 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| || |||||||| | ||||| || | ||||| || Sbjct 249670 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATGGT 249611 Query 225681 CTTGCCCGTCA 225691 ||||||||||| Sbjct 249610 CTTGCCCGTCA 249600 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| |||||||| ||||| || || |||| ||||| |||| | || | ||||| Sbjct 250018 CAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 249959 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || ||||| || ||||| || || ||||| Sbjct 249958 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTC 249899 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| || |||||||| | ||||| || | ||||| || Sbjct 249898 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATGGT 249839 Query 225681 CTTGCCCGTCA 225691 ||||||||||| Sbjct 249838 CTTGCCCGTCA 249828 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| |||||||| ||||| || || |||| ||||| |||| | || | ||||| Sbjct 248878 CAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 248819 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || ||||| || ||||| || || ||||| Sbjct 248818 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTC 248759 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| || || |||||||| | ||||| || | ||||| || Sbjct 248758 CTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATGGT 248699 Query 225681 CTTGCCCGTCA 225691 ||||||||||| Sbjct 248698 CTTGCCCGTCA 248688 >seq439 Length=1164846 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 4477 TGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCTGCTTGT 4536 || ||||||||||||||||| ||||| || || ||||| || || ||||| || ||||| Sbjct 789452 TGCCCATCAGTAATAGAGATGACATTAGTTGGAATATAGGCTGACACATCCCCAGCTTGA 789393 Query 4537 GTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578 || || | ||||| | ||| || || || ||||| |||||| Sbjct 789392 GTCTCAATGACAGGAAGGGCAGTCAGAGAGCCACCTCCAAAA 789351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192321124821806