Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq208 105 9e-18 seq49 105 9e-18 >seq208 Length=2424200 Score = 105 bits (116), Expect = 9e-18 Identities = 110/143 (77%), Gaps = 5/143 (3%) Strand=Plus/Minus Query 47791 TTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATCTT----CTTGAGACATAACTCCC 47846 || |||||||||| ||||||||| ||| || || | |||| ||||| |||||| Sbjct 1740971 TTGTTTAAAAGTCTGCATCTAAAGTGAAAGAGTTGTCATTGGGCTTG-GACATCACTCCC 1740913 Query 47847 ATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATA 47906 || ||||| || |||||||| || || || || ||||||||||| |||| ||| ||| Sbjct 1740912 ATCCGCTGATACTCTCCCACACGCTTTTCAAAGAAGTTAGTTTTGCCCTCCAGTGAGATA 1740853 Query 47907 TTTTCCATAAAATCAAATGGATT 47929 || ||||| || ||||||||||| Sbjct 1740852 TTCTCCATGAAGTCAAATGGATT 1740830 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || || | ||| || ||||| || || || ||||||| || || || || Sbjct 1738290 TCATCTCTGCTGATCAGTTCATTGGAAAAAGTAAGCCCAGGCATTAACCCTCGCTTCTTC 1738231 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 |||||||| || | ||| ||||| || ||||||||||| ||||| || || || || ||| Sbjct 1738230 AGCCAAAAGATAGACGCAAAAGAACCGGAAAAGAATATTCCTTCCACAGCTGCGAAGGCG 1738171 Score = 89.7 bits (98), Expect = 7e-13 Identities = 92/119 (77%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 48635 ATCT-ACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATAT 48693 |||| || ||||||||||||||||| |||||||||||||| |||||||| | ||| |||| Sbjct 1732686 ATCTGACCTCTTCAGCTGTCCAAAAGGATGCCTCTGCTTTCTTATACATTTGCCAGATAT 1732627 Query 48694 CACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTGCAAGGATAGGTTCC 48752 || ||| || || || || || ||||| | | ||||| | ||| | ||||||| Sbjct 1732626 CATGGTACTGAATGGGAAAGATGACAAAGCGGTGGGGATTCTCCCGAAGCAGAGGTTCC 1732568 >seq49 Length=4988178 Score = 105 bits (116), Expect = 9e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 |||||||||| ||||| | ||| || || || || ||||| ||||| ||||| | || | Sbjct 468617 CTTCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGACCCGGCATCAGTCCTCTCTTCT 468676 Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 ||||||||||||| || || |||| ||||| ||||| || ||||| || | ||||| | Sbjct 468677 TGAGCCAAAATATAGCTGCAAAAGCACCAGAGAAGAAAATTCCTTCAACCGAGGCAAAAG 468736 Query 48283 CGGTAAGTCTCTCTCC 48298 | ||||||||||| Sbjct 468737 CAACCAGTCTCTCTCC 468752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694549412483360