Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq208 125 1e-23 seq49 114 2e-20 >seq208 Length=2424200 Score = 125 bits (138), Expect = 1e-23 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | ||| || ||||| || ||||||||||||| || ||||| || Sbjct 1738290 TCATCTCTGCTGATCAGTTCATTGGAAAAAGTAAGCCCAGGCATTAACCCTCGCTTCTTC 1738231 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||| |||| ||| ||||| || ||||||||||| ||||| ||||| ||||| ||| Sbjct 1738230 AGCCAAAAGATAGACGCAAAAGAACCGGAAAAGAATATTCCTTCCACAGCTGCGAAGGCG 1738171 Query 46774 ACAAGTCTCTCTCC 46787 || | || ||||| Sbjct 1738170 ACTACTCGTTCTCC 1738157 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/143 (75%), Gaps = 5/143 (3%) Strand=Plus/Minus Query 46280 TTCTTTAAAAGTCGACATCTAAAGAAAAATGATTATCTT----CTTGTGACATAACTCCC 46335 || |||||||||| ||||||||| ||| || || | |||| ||||| |||||| Sbjct 1740971 TTGTTTAAAAGTCTGCATCTAAAGTGAAAGAGTTGTCATTGGGCTTG-GACATCACTCCC 1740913 Query 46336 ATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATA 46395 || || || || || ||||| || || || || ||||||||||| |||| ||| ||| Sbjct 1740912 ATCCGCTGATACTCTCCCACACGCTTTTCAAAGAAGTTAGTTTTGCCCTCCAGTGAGATA 1740853 Query 46396 TTTTCCATAAAATCAAACGGATT 46418 || ||||| || ||||| ||||| Sbjct 1740852 TTCTCCATGAAGTCAAATGGATT 1740830 Score = 86.0 bits (94), Expect = 9e-12 Identities = 91/119 (76%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 47124 ATCT-ACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATAT 47182 |||| || |||||||||||||| || || ||||||||||| |||||||| | ||| |||| Sbjct 1732686 ATCTGACCTCTTCAGCTGTCCAAAAGGATGCCTCTGCTTTCTTATACATTTGCCAGATAT 1732627 Query 47183 CACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGTATAGGTTCC 47241 || | || || || ||||| || ||||| | | ||||| | ||| | ||||||| Sbjct 1732626 CATGGTACTGAATGGGAAAGATGACAAAGCGGTGGGGATTCTCCCGAAGCAGAGGTTCC 1732568 >seq49 Length=4988178 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| ||||| | ||| || || || || || || ||||| ||||| | ||| | Sbjct 468617 CTTCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGACCCGGCATCAGTCCTCTCTTCT 468676 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 |||||||||||||||| || |||| ||||| ||||| || ||||| || | || || | Sbjct 468677 TGAGCCAAAATATAGCTGCAAAAGCACCAGAGAAGAAAATTCCTTCAACCGAGGCAAAAG 468736 Query 46772 CGACAAGTCTCTCTCC 46787 | || ||||||||||| Sbjct 468737 CAACCAGTCTCTCTCC 468752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712811873311680