Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq530 120 7e-22 seq102 120 7e-22 >seq530 Length=912484 Score = 120 bits (132), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || ||||| || ||||||||||| |||| | || | |||||| Sbjct 248649 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 248590 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| |||||||||||||||| | || || || || || Sbjct 248589 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCC 248530 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| |||| | | |||| ||| || || || || || || Sbjct 248529 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTCGGCTCCACCTCCAGGGTGATGGTC 248470 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTA 152108 |||||||| || |||||||| |||| |||||||||| Sbjct 248469 TTGCCCGTCAGGGTCTTCACAAAGATCTGCATTTTA 248434 Score = 114 bits (126), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || ||||| || ||||||||||| |||| | || | |||||| Sbjct 248877 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 248818 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| |||||||||||||||| | || || || || || Sbjct 248817 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCC 248758 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || ||||| |||| | | |||| ||| ||| || || || || || Sbjct 248757 TGGATCTTGGCCTTGACGTTCTCAATGGTGTC---ACTCGGCTCCACCTCCAGGGTGATG 248701 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || |||||||| |||| |||||| Sbjct 248700 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 248666 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || ||||| || ||||||||||| |||| | || | |||||| Sbjct 249105 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 249046 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| |||||||||||||||| | || || || || || Sbjct 249045 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCC 248986 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | |||| ||| ||| || || || || || Sbjct 248985 TGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTCGGCTCCACCTCCAGGGTGATG 248929 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || |||||||| |||| |||||| Sbjct 248928 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 248894 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || ||||| || ||||||||||| |||| | || | |||||| Sbjct 249333 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 249274 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| |||||||||||||||| | || || || || || Sbjct 249273 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCC 249214 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | |||| ||| ||| || || || || || Sbjct 249213 TGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTCGGCTCCACCTCCAGGGTGATG 249157 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || |||||||| |||| |||||| Sbjct 249156 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 249122 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || ||||| || ||||||||||| |||| | || | |||||| Sbjct 249561 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 249502 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| |||||||||||||||| | || || || || || Sbjct 249501 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCC 249442 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | |||| ||| ||| || || || || || Sbjct 249441 TGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTCGGCTCCACCTCCAGGGTGATG 249385 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || |||||||| |||| |||||| Sbjct 249384 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 249350 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || ||||| || ||||||||||| |||| | || | |||||| Sbjct 249789 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 249730 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| |||||||||||||||| | || || || || || Sbjct 249729 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCC 249670 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | |||| ||| ||| || || || || || Sbjct 249669 TGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTCGGCTCCACCTCCAGGGTGATG 249613 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || |||||||| |||| |||||| Sbjct 249612 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 249578 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || ||||| || ||||||||||| |||| | || | |||||| Sbjct 250017 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 249958 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| |||||||||||||||| | || || || || || Sbjct 249957 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCC 249898 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | |||| ||| ||| || || || || || Sbjct 249897 TGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTCGGCTCCACCTCCAGGGTGATG 249841 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || |||||||| |||| |||||| Sbjct 249840 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 249806 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || ||||| || ||||||||||| |||| | || | |||||| Sbjct 250245 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 250186 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| |||||||||||||||| | || || || || || Sbjct 250185 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCC 250126 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTC---TCTACTTCAAGAGTAATA 152069 || || || ||||| |||| | | |||| |||| || || || || || || Sbjct 250125 TGGATCTTGGCCTTGACGTTCTCAATGGTGTC---ACTCGGTTCCACCTCCAGGGTGATG 250069 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 250068 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 250034 >seq102 Length=3625303 Score = 120 bits (132), Expect = 7e-22 Identities = 160/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || || || ||||| || ||||||||||| |||| | || | |||||| Sbjct 3125452 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTACGGCCATCT 3125393 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| ||||||||||| || | | || |||||||| || Sbjct 3125392 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 3125333 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| |||||| |||| | | |||| ||| ||| || || | || || Sbjct 3125332 TGGATTTTAGCCTTGACATTCTCAATGGTGTC---ACTTGGCTCCACCTCCAAGGTGATG 3125276 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110 || ||||| ||||| || ||||| || | ||||||||| || Sbjct 3125275 GTCTTGCCAGTGAGGGTTTTCACAAAAATCTGCATTTTGCC 3125235 Score = 118 bits (130), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || || || ||||| || ||||||||||| || | | || | |||||| Sbjct 3125680 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCATCT 3125621 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| |||||||||||||| | | || |||||||| || Sbjct 3125620 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 3125561 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| |||||| | || | | |||| ||| ||| || || ||||| || Sbjct 3125560 TGGATTTTAGCCTTGACATTTTCAATGGTGTC---ACTCGGCTCCACCTCCAGAGTGATG 3125504 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || | |||||||| |||| |||||| Sbjct 3125503 GTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 3125469 Score = 118 bits (130), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || || || ||||| || ||||||||||| |||| | || | |||||| Sbjct 3125908 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 3125849 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| |||||||||||||| | | || |||||||| || Sbjct 3125848 TCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATACCTTCCTTGTCC 3125789 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| |||||| |||| | | |||| ||| ||| || || | || || Sbjct 3125788 TGGATTTTAGCCTTGACATTCTCAATGGTGTC---ACTCGGCTCCACCTCCAAGGTGATG 3125732 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || | |||||||| |||| |||||| Sbjct 3125731 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 3125697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153617544009579