Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq182 131 2e-25 seq160 125 1e-23 >seq182 Length=2638091 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 || |||||||| ||||| ||| |||||||||||| ||| || |||| ||| || ||| Sbjct 1924466 GTTTGGAACAGCTGCTCATCATCCCATTCTGGATGCTCTGTCTTGAGAATATCACAGACC 1924525 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 | ||||||||| | ||||| | ||||| |||||||| | || || |||| |||||| Sbjct 1924526 CGGTTGTGTTCTCGAAGCCACAATGTGGCATACATCATCAATCCTGGAACCAAGCCAAAG 1924585 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 ||||||| || |||| | || || || || | ||| ||||||||||| | Sbjct 1924586 ACCTCTTGCCCTACAGAAAATTTCAGGTGCTCAGGGGTGTGGGGTGGATAGATCATTTCT 1924645 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTG 9485 | || ||||| || | ||| |||||||| || || ||||||||||| Sbjct 1924646 GCTTGAGTTTCTTTCACTGTGGGTGGATACATCTCTCCATCAATCATCTG 1924695 Score = 114 bits (126), Expect = 2e-20 Identities = 162/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| | || || || ||||| |||||||||||| | || |||||||| | || Sbjct 1921366 AAGCCCACTTTGCCCCCAAATGTGCTTGGCTTCCAGTACTCGGGTGAGCAGATTGCATTT 1921425 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 ||||||| || || || || || || || || | ||| | ||| | ||||| |||||| Sbjct 1921426 CCCATGAGACCCTTCAGAGAAAATGGGGCTCCAAGCTCTATCATGGTTTCACCAAAGATG 1921485 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAGCTCCACAGCCTCGACGTC 8541 || ||||| || ||||| | |||||| | | |||||||||| ||| |||| || Sbjct 1921486 GCTCCAGGACGTGGTTTTTCTA-CAAGAAGGGCTGGATACAGCTCCATAGCATCGATATC 1921544 Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 ||| || || | ||||| || || || || ||||||||||| Sbjct 1921545 TCCATAGAGCTCTTCAAGTTCCGCTGCCATTTCTTTTTCTCCTGT 1921589 >seq160 Length=2890401 Score = 125 bits (138), Expect = 1e-23 Identities = 216/314 (69%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 8273 TCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGA 8332 || || || || |||||||| || | |||| |||| |||||||||| ||| || || Sbjct 672652 TCGTCCTCCGGCACTCGGAAAGCCACATACGGGCACCTCTTGACGTTGAGACACACCAGT 672593 Query 8333 GACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGC 8392 || | | || | || || | |||| || | | ||||| || ||||||||| Sbjct 672592 TTTTGGAGCGAAGCCGTGTTCACCAGTTCGAAGCCGGTGGCCCCGCCAAACGTGCTGGGC 672533 Query 8393 TTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCC 8452 ||||||||| ||||||| |||||| |||| | | |||||| || || || || || ||| Sbjct 672532 TTCCAGTACTCCGGGGAACAGATGGGGTTCCCAAAGAGGCCCTTTAGAGAAAAGGGTGCC 672473 Query 8453 CCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAAT 8512 || | ||| | |||||||| || || |||| ||| || || ||| ||||||| | Sbjct 672472 CCAATCTCTATCATGCTCTCCCCAAATATGGAGTTTGGGTGGCTCTTCTCCACCAGCAGG 672413 Query 8513 CCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATC 8572 || | ||| | ||||| || || | ||| || || || | |||||||| || | Sbjct 672412 CCAGGGTAGAACTCCAGGGCATCAATGTCACCATACAGCTCTTCCAGTTCGGCCGCCTTT 672353 Query 8573 TCCTTTTCTCCTGT 8586 || | || ||||| Sbjct 672352 TCTTCCTCCCCTGT 672339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716753595760960