Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq530 141 2e-28 seq32 91.5 4e-13 >seq530 Length=912484 Score = 141 bits (156), Expect = 2e-28 Identities = 165/220 (75%), Gaps = 7/220 (3%) Strand=Plus/Plus Query 177912 GTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTG 177971 |||||||||| | || || ||||| || || || || || || |||||||| |||||| Sbjct 248432 GTTAAAATGC---AGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTG 248488 Query 177972 GAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 || || || ||||||| ||||||||||| ||||| ||||||||||| || || | Sbjct 248489 GA--GCCGAGCGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTC 248546 Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089 | ||||||||||| | || ||||| ||||| || ||||| |||||||| | || || Sbjct 248547 CCCCGGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCT 248606 Query 178090 CCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||| |||| || || || || || || || || Sbjct 248607 CCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGT 248646 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || |||||||| ||||||||| ||| Sbjct 250037 CAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAACCGAGTGAC 250096 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| ||||||||||| || || || ||||||||||| Sbjct 250097 ACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGACCAGCAG 250156 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| ||||| || ||||| |||||||| | || || |||| || ||| || Sbjct 250157 AGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACATC 250216 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 250217 CAGAAGGAGTCCACCCTCCACCTGGT 250242 Score = 136 bits (150), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| |||||||| || || Sbjct 248669 CAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCGAGTG 248726 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| ||||||||||| || || || |||||||||| Sbjct 248727 ACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGACCAGC 248786 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 248787 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACA 248846 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || || || Sbjct 248847 TCCAGAAGGAGTCCACCCTCCACCTGGT 248874 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| |||||||| || || Sbjct 248897 CAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCGAGTG 248954 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| || ||||| ||||||||||| || || || |||||||||| Sbjct 248955 ACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGACCAGC 249014 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 249015 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACA 249074 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || || || Sbjct 249075 TCCAGAAGGAGTCCACCCTCCACCTGGT 249102 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| |||||||| || || Sbjct 249125 CAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCGAGTG 249182 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| || ||||| ||||||||||| || || || |||||||||| Sbjct 249183 ACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGACCAGC 249242 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 249243 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACA 249302 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || || || Sbjct 249303 TCCAGAAGGAGTCCACCCTCCACCTGGT 249330 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| |||||||| || || Sbjct 249353 CAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCGAGTG 249410 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| || ||||| ||||||||||| || || || |||||||||| Sbjct 249411 ACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGACCAGC 249470 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 249471 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACA 249530 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || || || Sbjct 249531 TCCAGAAGGAGTCCACCCTCCACCTGGT 249558 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| |||||||| || || Sbjct 249581 CAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCGAGTG 249638 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| || ||||| ||||||||||| || || || |||||||||| Sbjct 249639 ACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGACCAGC 249698 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 249699 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACA 249758 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || || || Sbjct 249759 TCCAGAAGGAGTCCACCCTCCACCTGGT 249786 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| |||||||| || || Sbjct 249809 CAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCGAGTG 249866 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| || ||||| ||||||||||| || || || |||||||||| Sbjct 249867 ACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGACCAGC 249926 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 249927 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACA 249986 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || || || Sbjct 249987 TCCAGAAGGAGTCCACCCTCCACCTGGT 250014 >seq32 Length=5936712 Score = 91.5 bits (100), Expect = 4e-13 Identities = 83/103 (81%), Gaps = 4/103 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || |||||||| | ||||| || || ||||| |||||||||| ||| || | Sbjct 2255270 CAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACTCTCGAGGTGG--AGCCCAGCG 2255327 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||||||||||||||||| || ||||||||||||||||| Sbjct 2255328 ACACCATCGAGAACGTCAAGGCCAAAATTCAGGACAAAGAAGG 2255370 Score = 86.0 bits (94), Expect = 2e-11 Identities = 82/103 (80%), Gaps = 4/103 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| | || || || || |||||||| |||||||| || ||| Sbjct 2259344 CAGATCTTTGTGAAAACCTTGACGGGCAAGACCATCACCCTTGAGGTGGA--GCCCAGCG 2259401 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||||||||||||||||| || ||||||||||||||||| Sbjct 2259402 ACACCATCGAGAACGTCAAGGCCAAAATTCAGGACAAAGAAGG 2259444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203519151840306