Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq530 165 8e-36 seq102 134 1e-26 >seq530 Length=912484 Score = 165 bits (182), Expect = 8e-36 Identities = 168/217 (77%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| || || ||| ||||||||| ||||| ||||||||||||||||| | || || Sbjct 248646 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCC 248587 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || ||||| | ||| ||||||| ||||| || ||| |||||| | Sbjct 248586 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGG 248527 Query 41774 ATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 || || ||| |||| | || |||||||||| ||||||||||| || || || Sbjct 248526 ATCTTGGCCTT----GACGTTCTCAATGGTGTCGCTCGGCTCCACCTCCAGGGTGATGGT 248471 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTA 41866 || |||||||| ||||| || || |||||||| ||| Sbjct 248470 CTTGCCCGTCAGGGTCTTCACAAAGATCTGCATTTTA 248434 Score = 163 bits (180), Expect = 3e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| || || ||| ||||||||| ||||| ||||||||||||||||| | || || Sbjct 249102 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCC 249043 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || ||||| | ||| ||||||| ||||| || ||| |||||| | Sbjct 249042 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGG 248983 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | | ||||| |||| ||||||||||| || || || || Sbjct 248982 ATCTTGGCCTTCACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATGGTCTTG 248923 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||||| ||||| || || ||||||||| Sbjct 248922 CCCGTCAGGGTCTTCACAAAGATCTGCATG 248893 Score = 163 bits (180), Expect = 3e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| || || ||| ||||||||| ||||| ||||||||||||||||| | || || Sbjct 249330 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCC 249271 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || ||||| | ||| ||||||| ||||| || ||| |||||| | Sbjct 249270 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGG 249211 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | | ||||| |||| ||||||||||| || || || || Sbjct 249210 ATCTTGGCCTTCACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATGGTCTTG 249151 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||||| ||||| || || ||||||||| Sbjct 249150 CCCGTCAGGGTCTTCACAAAGATCTGCATG 249121 Score = 163 bits (180), Expect = 3e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| || || ||| ||||||||| ||||| ||||||||||||||||| | || || Sbjct 249558 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCC 249499 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || ||||| | ||| ||||||| ||||| || ||| |||||| | Sbjct 249498 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGG 249439 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | | ||||| |||| ||||||||||| || || || || Sbjct 249438 ATCTTGGCCTTCACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATGGTCTTG 249379 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||||| ||||| || || ||||||||| Sbjct 249378 CCCGTCAGGGTCTTCACAAAGATCTGCATG 249349 Score = 163 bits (180), Expect = 3e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| || || ||| ||||||||| ||||| ||||||||||||||||| | || || Sbjct 249786 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCC 249727 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || ||||| | ||| ||||||| ||||| || ||| |||||| | Sbjct 249726 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGG 249667 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | | ||||| |||| ||||||||||| || || || || Sbjct 249666 ATCTTGGCCTTCACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATGGTCTTG 249607 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||||| ||||| || || ||||||||| Sbjct 249606 CCCGTCAGGGTCTTCACAAAGATCTGCATG 249577 Score = 163 bits (180), Expect = 3e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| || || ||| ||||||||| ||||| ||||||||||||||||| | || || Sbjct 250014 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCC 249955 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || ||||| | ||| ||||||| ||||| || ||| |||||| | Sbjct 249954 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGG 249895 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | | ||||| |||| ||||||||||| || || || || Sbjct 249894 ATCTTGGCCTTCACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATGGTCTTG 249835 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||||| ||||| || || ||||||||| Sbjct 249834 CCCGTCAGGGTCTTCACAAAGATCTGCATG 249805 Score = 159 bits (176), Expect = 3e-34 Identities = 165/214 (77%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| || || ||| ||||||||| ||||| ||||||||||||||||| | || || Sbjct 248874 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCC 248815 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || ||||| | ||| ||||||| ||||| || ||| |||||| | Sbjct 248814 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGG 248755 Query 41774 ATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 || || ||| |||| | || ||||| |||| ||||||||||| || || || Sbjct 248754 ATCTTGGCCTT----GACGTTCTCAATGGTGTCACTCGGCTCCACCTCCAGGGTGATGGT 248699 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || |||||||| ||||| || || ||||||||| Sbjct 248698 CTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 248665 Score = 150 bits (166), Expect = 2e-31 Identities = 163/214 (76%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| || || ||| ||||||||| ||||| ||||||||||||||||| | || || Sbjct 250242 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCC 250183 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || ||||| | ||| ||||||| ||||| || ||| |||||| | Sbjct 250182 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGG 250123 Query 41774 ATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 || || ||| |||| | || ||||| |||| |||||||||| || || || Sbjct 250122 ATCTTGGCCTT----GACGTTCTCAATGGTGTCACTCGGTTCCACCTCCAGGGTGATGGT 250067 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || ||||| ||||| || || ||||||||| Sbjct 250066 CTTGCCGGTCAGGGTCTTCACAAAGATCTGCATG 250033 >seq102 Length=3625303 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || || || ||| ||||||||| ||||| ||||||||||||||||| | || || Sbjct 3125905 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCA 3125846 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || ||||| | ||| ||||| | |||| | ||||||||| | Sbjct 3125845 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGG 3125786 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 ||||| ||| | | | ||||| |||| ||||||||||| || || || || Sbjct 3125785 ATTTTAGCCTTGACATTCTCAATGGTGTCACTCGGCTCCACCTCCAAGGTGATGGTCTTG 3125726 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| ||||| || || |||||||| Sbjct 3125725 CCAGTCAAGGTCTTCACAAAGATCTGCAT 3125697 Score = 132 bits (146), Expect = 4e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || || || || ||| ||||||||| ||||| ||||| |||||||| || Sbjct 3125686 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGG 3125627 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || ||||| | ||| ||||| | ||||| || ||| Sbjct 3125626 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCC 3125567 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| |||||| ||| | | ||||| |||| ||||||||||| || Sbjct 3125566 TTGTCCTGGATTTTAGCCTTGACATTTTCAATGGTGTCACTCGGCTCCACCTCCAGAGTG 3125507 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||| ||||| || || |||||||| Sbjct 3125506 ATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 3125469 Score = 123 bits (136), Expect = 2e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || || || || ||| ||||||||| ||||| |||||||| || || || Sbjct 3125458 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTACGG 3125399 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || ||||| | ||| || || | ||||| || ||| Sbjct 3125398 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 3125339 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| |||||| ||| | | | ||||| || | ||||||||||| || Sbjct 3125338 TTGTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCACTTGGCTCCACCTCCAAGGTG 3125279 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || || || || || || ||||||||||| || Sbjct 3125278 ATGGTCTTGCCAGTGAGGGTTTTCACAAAAATCTGCATTTT 3125238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462224547278800