Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq6273 96.9 4e-15 seq3926 96.9 4e-15 >seq6273 Length=24169 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 16983 ATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTT 17042 || |||| ||||| || || || || |||||||| || | ||||||||| ||||||| Sbjct 17692 ATACCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAGACCTCGTT 17633 Query 17043 TCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAA 17102 |||||| ||||||||| | || || || ||||||||||| || || || || | |||| Sbjct 17632 TCTTTAGCCAAAATATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAA 17573 Query 17103 ACGCGATTAATCGTTC 17118 | || | || ||||| Sbjct 17572 ATGCTACTACACGTTC 17557 Score = 89.7 bits (98), Expect = 5e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 |||||||| ||||| || || | || || ||||| || |||||||||||||| || ||| Sbjct 19647 ACACCCATCCTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGA 19588 Query 16724 GATATATTCTCCATGAAATCAAAAGGATT 16752 || ||||||||||| || ||||| ||||| Sbjct 19587 GAGATATTCTCCATAAAGTCAAATGGATT 19559 >seq3926 Length=149525 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 16983 ATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTT 17042 || |||| ||||| || || || || |||||||| || | ||||||||| ||||||| Sbjct 65423 ATACCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAGACCTCGTT 65364 Query 17043 TCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAA 17102 |||||| ||||||||| | || || || ||||||||||| || || || || | |||| Sbjct 65363 TCTTTAGCCAAAATATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAA 65304 Query 17103 ACGCGATTAATCGTTC 17118 | || | || ||||| Sbjct 65303 ATGCTACTACACGTTC 65288 Score = 89.7 bits (98), Expect = 5e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 |||||||| ||||| || || | || || ||||| || |||||||||||||| || ||| Sbjct 67356 ACACCCATCCTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGA 67297 Query 16724 GATATATTCTCCATGAAATCAAAAGGATT 16752 || ||||||||||| || ||||| ||||| Sbjct 67296 GAGATATTCTCCATAAAGTCAAATGGATT 67268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517207383950400