Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq7713 95.1 9e-15 seq955 95.1 9e-15 seq446 87.8 1e-12 >seq7713 Length=13408 Score = 95.1 bits (104), Expect = 9e-15 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||||||||| || || || || |||||||||||| ||||||||| || || |||||||| Sbjct 10600 CTTTAGTTCTTTACTAAGTACTACATTAATTCTGTTTTTTAAAGGACGATTTTTCTCAGG 10659 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTT 4394 || ||| |||||||||| ||||||| || || | ||| || || Sbjct 10660 GATGGAGTACCAAGTCTTCCTACCCATTATGACCACATTTTGCTT 10704 >seq955 Length=741658 Score = 95.1 bits (104), Expect = 9e-15 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||||||||| || || || || |||||||||||| ||||||||| || || |||||||| Sbjct 737532 CTTTAGTTCTTTACTAAGTACTACATTAATTCTGTTTTTTAAAGGACGATTTTTCTCAGG 737591 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTT 4394 || ||| |||||||||| ||||||| || || | ||| || || Sbjct 737592 GATGGAGTACCAAGTCTTCCTACCCATTATGACCACATTTTGCTT 737636 >seq446 Length=844205 Score = 87.8 bits (96), Expect = 1e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| || || ||||| ||||| |||||||| || ||||| | ||| || | ||||||| Sbjct 572727 CTTTGTACTCGGCTCCAAAATGTCTCCACTGGAAGCCATAAATAGGACCTAAGTCTCCTT 572786 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | ||||| |||| || |||| ||||| ||| | ||| ||||| |||||||||| Sbjct 572787 CCTCTCTAGAGAAAAATCCCTGTTTGTCTAAGAATTGCCGAGAACCATTGGCATCCCAAA 572846 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTT 102180 | | || || || || |||||||| Sbjct 572847 TCTTAACTCCCTTAGCAGAAAGCTCTTT 572874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361021024282280