Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq39 120 3e-22 seq4804 111 1e-19 >seq39 Length=347859 Score = 120 bits (132), Expect = 3e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || || ||||||||||| | |||||| ||| || | Sbjct 7468 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCTTCCA 7527 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||||||| ||||| |||| || | |||||| |||||||| ||||| |||||||| | Sbjct 7528 GCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGA 7587 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | || | |||||| || ||| ||||| | ||| | ||||| | Sbjct 7588 TCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCTAGGGTGATGGTTTTCC 7647 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| ||| || ||||| |||||||| Sbjct 7648 CGGTCAAAGTCTTCACAAAGATCTGCAT 7675 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| ||| | ||||| ||| || Sbjct 5871 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCC 5930 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| ||||| |||| || | ||| ||||||||||| ||||| |||||||| Sbjct 5931 AGCTGTTTGCCAGCAAAGATCAGCCTCTGTTGATCGGGAGGAATGCCTTCCTTGTCCTGG 5990 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| || || ||||| | ||| | ||||| Sbjct 5991 ATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTTTTC 6050 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| || |||||||| |||||||| Sbjct 6051 CCGGTCAAGGTCTTTACAAAGATCTGCAT 6079 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || || |||||||| ||| | ||||| ||| || | Sbjct 7012 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCCA 7071 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||||||| || || |||| || | ||| ||||||||||| ||||| |||||||| | Sbjct 7072 GCTGTTTGCCGGCAAAGATCAGCCTCTGTTGATCGGGAGGAATGCCTTCCTTGTCCTGGA 7131 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | || | |||||| || || ||||| | ||| | ||||| | Sbjct 7132 TCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCCACCTCTAGGGTGATGGTTTTCC 7191 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || || ||||| |||||||| Sbjct 7192 CGGTCAAGGTCTTCACAAAGATCTGCAT 7219 >seq4804 Length=43647 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| || | |||||| ||| || Sbjct 5473 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTCC 5414 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| ||||| |||| || | ||| ||||||||||| ||||| |||||||| Sbjct 5413 AGCTGTTTGCCAGCAAAGATCAGCCTCTGTTGATCGGGAGGAATGCCTTCCTTGTCCTGG 5354 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| || || ||||| | ||| | ||||| Sbjct 5353 ATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTTTTC 5294 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| || || ||||| |||||||| Sbjct 5293 CCGGTCAAGGTCTTCACAAAGATCTGCAT 5265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433553979537760