Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq743 147 4e-30 >seq743 Length=534197 Score = 147 bits (162), Expect = 4e-30 Identities = 135/171 (79%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 51885 GATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGT 51944 |||||| |||| ||||||| |||||| |||||||||||||| || || |||| || | Sbjct 156846 GATAGCAGGAGCTTTATGGTGGTACTACATATCCAAAGGGATTGAGTATCTGGACACAAT 156787 Query 51945 ATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTT 52004 ||| ||||| || || || ||||||||||| | || ||||| || || ||||| ||||| Sbjct 156786 ATTCTTCATCCTAAGAAAGAAATTTAATCAAATCAGCTTTCTTCATGTCTATCACCATTT 156727 Query 52005 TACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 |||||||||||| || | ||||| || || || ||| |||| ||||| || Sbjct 156726 CACTATGTTTACTTTATGGTGGATTGGCATAAAGTGGGTTGCAGGAGGACA 156676 Score = 113 bits (124), Expect = 8e-20 Identities = 104/132 (79%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 ||||||||||||||||| | ||| |||| || |||||| ||||||||| |||||||| Sbjct 154879 GCATTTTTTGGAGCTCATATGAATGCTTTCATTCATGTTGTTATGTACATGTATTATGGA 154820 Query 52117 ATGGCCGCTTGTGGTCCTATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTATA 52176 | || || ||||| || | |||| |||||||| ||||||||||| || | || ||| Sbjct 154819 CTAGCTGCCTGTGGCCCAAAGTTCCACAAGTATCTTTGGTGGAAACGATACTTGACCATA 154760 Query 52177 ATGCAGTTGGTA 52188 ||||| || ||| Sbjct 154759 ATGCAATTAGTA 154748 Score = 96.9 bits (106), Expect = 6e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||||||| | || | || || | || |||| ||||| || |||||||| || Sbjct 152894 GGTTCAGTTCCATTTGACTTTTGGCCACGCCGCCCTGTCTATTTATATTGATTGCCCCTT 152835 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 ||| | |||||| || ||| || ||| ||||| | | | |||||| | |||||||| Sbjct 152834 TCCTAGATGGATGCATTGGGGTGTCATTTTCTATGCCACCACTTTCATTATTCTGTTTGG 152775 Query 52305 TAACTTCTATTTTAGAACATACAAGA 52330 ||||||||| | | | |||||||||| Sbjct 152774 TAACTTCTACTATCGGACATACAAGA 152749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922593490891200