Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq6273 118 1e-21 seq3926 118 1e-21 seq687 105 6e-18 >seq6273 Length=24169 Score = 118 bits (130), Expect = 1e-21 Identities = 115/147 (78%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 16246 ACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAG 16305 |||| || || | || || ||||| || | ||| || ||||| ||||| || ||||| || Sbjct 17699 ACAA-GCCATACCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAG 17641 Query 16306 TCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAAC 16365 |||||||| || | ||||||||| | ||||| || ||||||||||| || |||||||| Sbjct 17640 ACCTCGTTTCTTTAGCCAAAATATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAAC 17581 Query 16366 TGCGGCAAATGCAACCAATCGCTCACC 16392 ||| |||||||| || | || ||||| Sbjct 17580 TGCAGCAAATGCTACTACACGTTCACC 17554 Score = 102 bits (112), Expect = 8e-17 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 ||| |||||||| || |||||||||||||||||||||||||| |||||||| || ||||| Sbjct 15351 AATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGCAATCTG 15292 Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 || ||||| || || | ||||| | | ||||||||| Sbjct 15291 GAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 15253 >seq3926 Length=149525 Score = 118 bits (130), Expect = 1e-21 Identities = 115/147 (78%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 16246 ACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAG 16305 |||| || || | || || ||||| || | ||| || ||||| ||||| || ||||| || Sbjct 65430 ACAA-GCCATACCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAG 65372 Query 16306 TCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAAC 16365 |||||||| || | ||||||||| | ||||| || ||||||||||| || |||||||| Sbjct 65371 ACCTCGTTTCTTTAGCCAAAATATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAAC 65312 Query 16366 TGCGGCAAATGCAACCAATCGCTCACC 16392 ||| |||||||| || | || ||||| Sbjct 65311 TGCAGCAAATGCTACTACACGTTCACC 65285 Score = 102 bits (112), Expect = 8e-17 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 ||| |||||||| || |||||||||||||||||||||||||| |||||||| || ||||| Sbjct 62991 AATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGCAATCTG 62932 Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 || ||||| || || | ||||| | | ||||||||| Sbjct 62931 GAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 62893 >seq687 Length=330907 Score = 105 bits (116), Expect = 6e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 |||| ||| ||||| || ||| || |||| ||| | |||||||||| | | || Sbjct 128780 AAAAGTCAGCATCTAAAGTAAATACCTTATTATTTGCTTGGGACATAACTGCAAAATGTT 128839 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 ||||||| ||||||| | ||||||||||| ||||||||||| | ||||| ||||||| Sbjct 128840 GATATTCTGAAACTCTCCTCTCAAAGAAATTGGTTTTTCCTTCCAGGGAAATGTTTTCCA 128899 Query 16008 TAAAATCAAAAGGATTTTTTG 16028 | || |||||||| |||| || Sbjct 128900 TGAAGTCAAAAGGGTTTTCTG 128920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462209748408000