Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq336 412 2e-110 seq526 105 5e-18 >seq336 Length=1609600 Score = 412 bits (456), Expect = 2e-110 Identities = 695/998 (70%), Gaps = 10/998 (1%) Strand=Plus/Plus Query 107628 TACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGA--AG-TTCATACAG 107684 ||||| ||| |||||| || ||| || ||| || | |||||| || ||||| | Sbjct 219241 TACCTGAACGTAACCAAGGATTGTCAGAACTTTAAAG---AAAGGAGAAGATTCATTGGG 219297 Query 107685 TTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAG 107744 |||| |||||| |||| || | ||||||| ||||| || || |||||| |||||||| Sbjct 219298 TTCCACCTGAGTGAAGAGGAAAAAAACTTCCCTATTGCTTATTCCATGGTGATCCATGAG 219357 Query 107745 AAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGT 107804 |||||||| | |||||| || | ||| || || | | ||| ||||||||| |||||||| Sbjct 219358 AAGATTGAGATGTTTGAAAGGTTACTGAGATCCATCTTTGCTCCTCAGAACGTATACTGT 219417 Query 107805 GTCCACGTGGATGTGAAGTC-CCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTC 107863 ||||||||||| || || |||| | || |||| || || || |||||||| || Sbjct 219418 GTCCACGTGGACAGCAAATCTCCCAAACTTTTCCAAAAAGCCGTTC-AGGCCATTGCCTC 219476 Query 107864 CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTC 107923 ||||||| |||||| || |||| |||| || ||||| |||||||| ||||| Sbjct 219477 CTGCTTCGACAATGTTTTTCTGGCTTCTAAGCAGGAGAGCGTGGTGTATGCCTCTTGGTC 219536 Query 107924 CAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAA 107983 || || |||||||| |||||||| ||| | || |||| || ||| ||| |||| Sbjct 219537 GAGGGTCCAAGCTGATCTGAACTGCATGAAGGATCTGCTTCAAAGCAAGATGCATTGGAG 219596 Query 107984 GTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCT 108043 |||| | ||||| || || ||||| || ||||| || ||||| || | ||||| |||| Sbjct 219597 GTACCTCCTGAACACCTGTGGGACCGATTTCCCTATCAAGACAAACACAGAGATCGTCCG 219656 Query 108044 GGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaa 108103 ||||| || || |||| || || |||| |||||||||||| ||| || | || Sbjct 219657 AGCCCTAAAACTGCTGAACGGGAAAAACAACATGGAGTCTGAGAAACCATCATCCTATAA 219716 Query 108104 aaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACA-CACTGTACCCTACCAGCAAGA 108162 ||| || ||||||||||||| | | || ||||| | | || || || |||| | || Sbjct 219717 AAAGAACCGCTGGAAATACCACCACGAAGTGACCAATAGCATCGT-CCAGACCAAGATGA 219775 Query 108163 TGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCT 108222 ||| || || || | || | |||||| || || |||||||| | |||| | Sbjct 219776 CAAAGAGTCCCCCTCCCCAAAAGTCTCCCATGCATACTGGCAATGCCTACATCGTGGTCA 219835 Query 108223 CTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGG 108282 || | | |||||||| || |||| || |||| | || | || | || ||| Sbjct 219836 CTAGGGAGTTTGTCCAGCACCTCTTCGAGGACCCGACCGCCAGGCGCTTGATCGAGTGGT 219895 Query 108283 TCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGA 108342 ||| || || || ||||| || || || |||||||||||| | || || ||| | Sbjct 219896 CCAAGGATACGTACAGCCCGGATGAGCATCTCTGGGCCACCTTGCATCGGATGCCGGAGG 219955 Query 108343 TGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCA 108402 |||| ||||| || ||| | | ||| | | || || ||||||||| | || ||| Sbjct 219956 TGCCAGGCTCAGTCCCTTCCAATGACAAATTTGACCTCACAGACATGAACTCTATTGCCC 220015 Query 108403 GGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCT 108462 |||| || |||||| ||| || || || |||||| ||| || ||||| | | | Sbjct 220016 GGCTGGTAAAGTGGTCCTACATTGAAGGGGACATCAGCAAGGGAGCCCCTTACGGCCAGT 220075 Query 108463 GCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTC 108522 | |||||| | | ||| |||| ||||| | || ||| || ||||| |||| | | Sbjct 220076 GTTCTGGAGCCTACCGGCGGGCAGTCTGCGTGTATGGGTTTGGAGACCTCCCCTGGCTAC 220135 Query 108523 TCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGC 108582 || | || |||||||| || |||||||| ||||| || || || || ||| | | Sbjct 220136 TCTCACAGCACCACCTCTTTGCCAACAAGTTCGACCCCAGCGTTGACGACTGTGTCATCC 220195 Query 108583 AGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTAT 108620 | || || |||||||| || || | |||||||||||| Sbjct 220196 AATGTTTGGAAGAGTATCTGCGCTACAAGGCCATCTAT 220233 >seq526 Length=780384 Score = 105 bits (116), Expect = 5e-18 Identities = 226/334 (68%), Gaps = 4/334 (1%) Strand=Plus/Plus Query 107698 AAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACT 107757 ||||||| ||| || |||||||| || || || |||| || | || ||| | | Sbjct 575821 AAGAAGAAGCAGAATTTCCCATTGCATATTCAATAGTGGCTTATCATAAAATTAATATGC 575880 Query 107758 TTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATG 107817 |||| | || ||| || | | |||| ||||||||| ||||| | || || || Sbjct 575881 TTGAGAGACTTCTGAGAATCATATATGTTCCTCAGAACTATTACTGCATTCATGTTGACA 575940 Query 107818 TGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATG 107877 |||||||||||| ||||| | || || || | ||| || || || | |||| Sbjct 575941 AAAAGTCCCCAGAGTCTTTCTTGGCAGCTGTAAAAGGGATTGCATCATGTTTTCATAATG 576000 Query 107878 TCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTG 107937 ||||||| ||||| | |||| || || ||||| || ||| | | || ||||||| Sbjct 576001 TCTTCATTGCCAGCCAATTGGAAAGTGTAGTGTATGCATCATGGAGCCGGGTACAAGCTG 576060 Query 107938 ACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA--GTGCCATGGAAGTACTTACTGAA 107995 |||| ||||| || |||| | || || | | | ||| |||||||||||| | || Sbjct 576061 ACCTCAACTGCAT-GAAGGATCTCTATAG-GATGAATGTGAGCTGGAAGTACTTAATCAA 576118 Query 107996 TACATGCGGGACAGACTTCCCCATAAAGACCAAT 108029 | ||||| | || ||||| || ||||||||| Sbjct 576119 TCTCTGCGGTATGGATTTCCCAATCAAGACCAAT 576152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348046896180720