Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq6273 129 6e-25 seq3926 129 6e-25 seq687 89.7 5e-13 >seq6273 Length=24169 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||||||||| || || || ||||| || | ||| ||||||| |||||||| | Sbjct 17689 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAGACCTCGTTTCT 17630 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 ||| ||||||||| | || || || || |||||||| ||||| |||||||||||||| | Sbjct 17629 TTAGCCAAAATATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 17570 Query 14346 CTATTAATCGTTCTCC 14361 ||| || ||||| || Sbjct 17569 CTACTACACGTTCACC 17554 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| |||||||||| | || | |||||||||||||||||||| ||| Sbjct 19653 GACATCACACCCATCCTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCT 19594 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATT 13992 ||||| || ||||| |||||||| ||||||||||| Sbjct 19593 TCCAGAGAGATATTCTCCATAAAGTCAAATGGATT 19559 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/116 (79%), Gaps = 4/116 (3%) Strand=Plus/Minus Query 14459 TCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14516 ||||||| | ||| |||||| |||||||||||||| ||||||||||| || || |||| Sbjct 15365 TCTTTAGAATCCTT--AATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGT 15308 Query 14517 TTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCT 14572 | ||||| || ||||| || ||||| ||||| | ||||||| |||||| ||| Sbjct 15307 TCTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 15252 >seq3926 Length=149525 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||||||||| || || || ||||| || | ||| ||||||| |||||||| | Sbjct 65420 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAGACCTCGTTTCT 65361 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 ||| ||||||||| | || || || || |||||||| ||||| |||||||||||||| | Sbjct 65360 TTAGCCAAAATATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 65301 Query 14346 CTATTAATCGTTCTCC 14361 ||| || ||||| || Sbjct 65300 CTACTACACGTTCACC 65285 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| |||||||||| | || | |||||||||||||||||||| ||| Sbjct 67362 GACATCACACCCATCCTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCT 67303 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATT 13992 ||||| || ||||| |||||||| ||||||||||| Sbjct 67302 TCCAGAGAGATATTCTCCATAAAGTCAAATGGATT 67268 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/116 (79%), Gaps = 4/116 (3%) Strand=Plus/Minus Query 14459 TCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14516 ||||||| | ||| |||||| |||||||||||||| ||||||||||| || || |||| Sbjct 63005 TCTTTAGAATCCTT--AATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGT 62948 Query 14517 TTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCT 14572 | ||||| || ||||| || ||||| ||||| | ||||||| |||||| ||| Sbjct 62947 TCTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 62892 >seq687 Length=330907 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 14228 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 14287 |||||||| ||||||||||| || || || || | |||||||| || |||| || || Sbjct 133840 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 133899 Query 14288 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14346 | ||||||||| || || || | || || ||||| ||||| || || ||||| ||||| Sbjct 133900 AGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCGAACGC 133958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482030387150400