Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6273 129 7e-25 seq3926 129 7e-25 seq687 89.7 6e-13 seq3825 84.2 3e-11 >seq6273 Length=24169 Score = 129 bits (142), Expect = 7e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||||||||| | || |||||||| || ||||||||||| || || || || | Sbjct 17689 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAGACCTCGTTTCT 17630 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||||||||||| || || || || ||||||||||||||||| ||||||||||| | Sbjct 17629 TTAGCCAAAATATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 17570 Query 33724 C 33724 | Sbjct 17569 C 17569 Score = 86.0 bits (94), Expect = 8e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 33833 TTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33892 ||| ||| ||| |||| |||||||| || | | |||||||||||| ||||||||||| Sbjct 15366 TTCTTTAGAATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 15307 Query 33893 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || ||||| ||||| || || |||||||| | || || || | || |||||| Sbjct 15306 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 15252 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 34079 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 34138 ||| ||||| ||||||| ||||| |||||||| || || ||||| | |||||||||||| Sbjct 11449 CACCTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATG 11390 Query 34139 ATATTGGATTGGGAAAATAACAAA 34162 ||||| || || ||||| ||||| Sbjct 11389 GTATTGAATAGGAAAAATGACAAA 11366 >seq3926 Length=149525 Score = 129 bits (142), Expect = 7e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||||||||| | || |||||||| || ||||||||||| || || || || | Sbjct 65420 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAGACCTCGTTTCT 65361 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||||||||||| || || || || ||||||||||||||||| ||||||||||| | Sbjct 65360 TTAGCCAAAATATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 65301 Query 33724 C 33724 | Sbjct 65300 C 65300 Score = 86.0 bits (94), Expect = 8e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 33833 TTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33892 ||| ||| ||| |||| |||||||| || | | |||||||||||| ||||||||||| Sbjct 63006 TTCTTTAGAATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 62947 Query 33893 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || ||||| ||||| || || |||||||| | || || || | || |||||| Sbjct 62946 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 62892 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 34079 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 34138 ||| ||||| ||||||| ||||| |||||||| || || ||||| | |||||||||||| Sbjct 58658 CACCTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATG 58599 Query 34139 ATATTGGATTGGGAAAATAACAAA 34162 ||||| || || ||||| ||||| Sbjct 58598 GTATTGAATAGGAAAAATGACAAA 58575 >seq687 Length=330907 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| ||||| | ||| || || || || || || ||||||| || | ||| || Sbjct 133840 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 133899 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33725 ||||||||||||| || || | || || |||||||||||||| || ||||| || ||| Sbjct 133900 AGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCGAACGCA 133959 Query 33726 ATAAGTCTCTCTCC 33739 | | ||| || || Sbjct 133960 ACCACTCTTTCACC 133973 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 34079 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 34138 ||| ||||| |||||||| || || |||| |||| || ||||| ||||| || ||| | Sbjct 137807 CACCTCTTCTACTGTCCAGAAAGAAGCCTGAGCCTGCTTGTACATTTTCCATATATCAGG 137866 Query 34139 ATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 |||||||||||||| || ||||||| || ||||| Sbjct 137867 GTATTGGATTGGGAAGATGACAAATCGATGGGGATT 137902 Score = 82.4 bits (90), Expect = 1e-10 Identities = 100/136 (74%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 33238 AAAAGTCAACATCTAAAGAAAAA---TGATTGTCTTCTTGAGACATAACTCCCATTTTTT 33294 |||||||| ||||||||| ||| | ||| | | |||| ||||||||| | | | || Sbjct 128780 AAAAGTCAGCATCTAAAGTAAATACCTTATTATTTGCTTGGGACATAACTGCAAAATGTT 128839 Query 33295 GGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCA 33354 | ||||| || | | || || ||||| ||||||||||||| || || ||||||| Sbjct 128840 GATATTCTGAAACTCTCCTCTCAAAGAAATTGGTTTTTCCTTCCAGGGAAATGTTTTCCA 128899 Query 33355 TGAAATCAAACGGATT 33370 |||| ||||| || || Sbjct 128900 TGAAGTCAAAAGGGTT 128915 >seq3825 Length=175568 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || ||||| || || || || || | || || || |||||||| | Sbjct 110528 TCCAGCCGTAGAAGTGCATGCTGGTCAGCTTCCCGTAGTTGGGCTCCGCGATATGGATGT 110469 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| ||| || || || ||||||||||| |||| ||| || ||||| || | ||| |||| Sbjct 110468 TCAGAGACTGGCTCTGGTCGATGAAGGCCCCCCGGTCAGCGGCCATCTTCAGGATGGTCT 110409 Query 62233 TTTGTGCAATTTCCCA 62248 | || | || ||||| Sbjct 110408 TCTGGGAGATCTCCCA 110393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629406014198400