Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq6273 134 1e-26 seq3926 134 1e-26 >seq6273 Length=24169 Score = 134 bits (148), Expect = 1e-26 Identities = 110/134 (82%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||||||| || || ||||||||||| || | ||||||||||| |||||||| ||| Sbjct 17687 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAGACCTCGTTTCTTT 17628 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||||||||| | ||||| || ||||||||||| ||||| || || || ||||||||| Sbjct 17627 AGCCAAAATATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 17568 Query 11774 ACTACTCTTTCTCC 11787 ||||| | ||| || Sbjct 17567 ACTACACGTTCACC 17554 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 || ||||| || | |||||||||||||||||||||||| || ||||| || || || || Sbjct 15347 TAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGCAATCTGGAAG 15288 Query 11960 CCATAGAAACATCGTGCCTCTG 11981 ||||||||||| ||||| |||| Sbjct 15287 CCATAGAAACAGCGTGCTTCTG 15266 >seq3926 Length=149525 Score = 134 bits (148), Expect = 1e-26 Identities = 110/134 (82%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||||||| || || ||||||||||| || | ||||||||||| |||||||| ||| Sbjct 65418 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAGACCTCGTTTCTTT 65359 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||||||||| | ||||| || ||||||||||| ||||| || || || ||||||||| Sbjct 65358 AGCCAAAATATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 65299 Query 11774 ACTACTCTTTCTCC 11787 ||||| | ||| || Sbjct 65298 ACTACACGTTCACC 65285 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 || ||||| || | |||||||||||||||||||||||| || ||||| || || || || Sbjct 62987 TAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGCAATCTGGAAG 62928 Query 11960 CCATAGAAACATCGTGCCTCTG 11981 ||||||||||| ||||| |||| Sbjct 62927 CCATAGAAACAGCGTGCTTCTG 62906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468218619043200