Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq39 113 4e-20 seq4804 107 2e-18 seq4617 91.5 1e-13 >seq39 Length=347859 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || | ||| | || ||||| || || ||||| || ||| Sbjct 5853 CCACCTCTCAGACGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 5912 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| ||||| |||||||| |||||| ||||||| | || ||||||||||| Sbjct 5913 AGTGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGTTGATCGGGAGGA 5972 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| || || | | || | ||||| |||| |||||| Sbjct 5973 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCCACC 6032 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || || |||||||| || ||||| || || ||||| Sbjct 6033 TCCAGGGTGATGGTTTTCCCGGTCAAGGTCTTTACAAAGATCTGCAT 6079 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | ||||| ||||| |||||||| ||| Sbjct 6339 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCCAGCTGTTTGCCA 6398 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| |||||||| |||||||| ||||| ||| || || Sbjct 6399 GCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 6458 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | || || |||||||| || Sbjct 6459 ACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTTTTCCCGGTCAAGGTC 6518 Query 139748 TTTACGAATATTTGCAT 139764 ||||| || || ||||| Sbjct 6519 TTTACAAAGATCTGCAT 6535 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| | | ||||| || | || | || ||||| || || ||||| ||||| Sbjct 7448 GCCGCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGA 7507 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||||| |||||||| |||||| ||||||| | ||||| |||||||| Sbjct 7508 GAGAGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGG 7567 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| || || | | || | |||||| |||||||||| Sbjct 7568 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCAC 7627 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | || || |||||||| || || || || || ||||| Sbjct 7628 CTCTAGGGTGATGGTTTTCCCGGTCAAAGTCTTCACAAAGATCTGCAT 7675 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | |||| ||||| |||||||| ||| Sbjct 7251 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCA 7310 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| |||||||| |||||||| ||||| ||| || || Sbjct 7311 GCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 7370 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | || || |||||||| || Sbjct 7371 ACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTTTTCCCGGTCAAGGTC 7430 Query 139748 TTTACGAATATTTGCAT 139764 ||||| || || ||||| Sbjct 7431 TTTACAAAGATCTGCAT 7447 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | |||| ||||| |||||||| || Sbjct 6567 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCG 6626 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| || ||||| |||||||| ||||| ||| || || Sbjct 6627 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 6686 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||| ||||||||||||| | ||| | || || |||||||| || Sbjct 6687 ACGTTTTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTC 6746 Query 139748 TTTACGAATATTTGCAT 139764 ||||| || || ||||| Sbjct 6747 TTTACAAAGATCTGCAT 6763 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | ||||| ||||| |||||||| || Sbjct 7023 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCCAGCTGTTTGCCG 7082 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | || ||||||||||| |||||||| ||||| ||| || || Sbjct 7083 GCAAAGATCAGCCTCTGTTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 7142 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| |||| |||||||| | ||| | || || |||||||| || Sbjct 7143 ACGTTCTCAATGGTGTCACTGGGTTCCACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTC 7202 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 7203 TTCACAAAGATCTGCAT 7219 >seq4804 Length=43647 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | |||| ||||| |||||||| || Sbjct 2097 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCG 2038 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| |||||||| |||||||| ||||| ||| || || Sbjct 2037 GCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 1978 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| ||||||||||||| | ||| | || || |||||||| || Sbjct 1977 ACATTCTCAATGGTGTCGCTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTC 1918 Query 139748 TTTACGAATATTTGCAT 139764 ||||| || || ||||| Sbjct 1917 TTTACAAAGATCTGCAT 1901 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||||| || | ||| | || ||||| || || ||||| || || | |||| Sbjct 5480 ACGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCC 5421 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| |||||||| |||||| ||||||| | || ||||||||||| |||||||| || Sbjct 5420 ATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGTTGATCGGGAGGAATGCCTTCCTT 5361 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || || | | || | ||||| |||| |||||||| | ||| | Sbjct 5360 GTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGAT 5301 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || |||||||| || || || || || ||||| Sbjct 5300 GGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 5265 >seq4617 Length=95303 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || ||||| ||||||| | |||||||| ||||| |||||||| ||| Sbjct 86401 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTG 86342 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| ||||||||||||| | ||| | Sbjct 86341 TCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 86282 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || ||||| || || || || || ||||| Sbjct 86281 GTCTTCCCAGTCAAGGTCTTGACAAAGATCTGCAT 86247 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || |||||||| ||||| || ||| | |||| ||||| ||||| || || Sbjct 85987 GTGGATTCTTTTTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 85928 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || ||||||| | || ||||| ||||| |||||||| ||||| ||| || || Sbjct 85927 GCGAAGATCAGCCTCTGTTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 85868 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | ||||| || ||||| || Sbjct 85867 ACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTC 85808 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 85807 TTGACAAAGATCTGCAT 85791 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | |||| ||||| ||||| || || Sbjct 85303 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 85244 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || ||||||| | |||||||| ||||| |||||||| || || ||| || || Sbjct 85243 GCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTAGCCTTG 85184 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | ||||| || ||||| || Sbjct 85183 ACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTC 85124 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 85123 TTCACAAAGATCTGCAT 85107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495739822176000