Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq4804 93.3 3e-14 seq39 93.3 3e-14 >seq4804 Length=43647 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42906 ATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTG 42965 ||||| ||| |||||| || | ||||| ||||| | || || | || |||| || Sbjct 2104 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTG 2045 Query 42966 TTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAA 43025 |||||||||||| |||| | ||| || |||| || | ||||| || || |||| Sbjct 2044 TTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTT 1985 Query 43026 CTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGT 43085 | ||||| | ||| ||||||| | ||| || |||| || || ||||| ||||| Sbjct 1984 GGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGT 1925 Query 43086 TAGAGTTTTCACAAAAATTTGCATTTTCT 43114 | || || ||||| || |||||||||| Sbjct 1924 CAAGGTCTTTACAAAGATCTGCATTTTCT 1896 >seq39 Length=347859 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 42906 ATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTG 42965 ||||| ||| |||||| || | ||||| ||||| | ||| || | || |||| || Sbjct 7016 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCCAGCTG 7075 Query 42966 TTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAA 43025 |||||||||||| |||| | ||||||||||| || | ||||| || || |||| Sbjct 7076 TTTGCCGGCAAAGATCAGCCTCTGTTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTT 7135 Query 43026 CTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGT 43085 | ||||| | ||| ||||| | | || || |||| || || ||||| ||||| Sbjct 7136 GGCCTTGACGTTCTCAATGGTGTCACTGGGTTCCACCTCTAGGGTGATGGTTTTCCCGGT 7195 Query 43086 TAGAGTTTTCACAAAAATTTGCAT 43109 | || |||||||| || ||||| Sbjct 7196 CAAGGTCTTCACAAAGATCTGCAT 7219 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||| |||| |||| |||||| || | ||||| ||||| | ||| || | || ||| Sbjct 5871 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCC 5930 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | |||||||| ||||| |||| | ||||||||||| || | ||||| || || | Sbjct 5931 AGCTGTTTGCCAGCAAAGATCAGCCTCTGTTGATCGGGAGGAATGCCTTCCTTGTCCTGG 5990 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| | ||||| | ||| ||||| | | || || || | || || ||||| Sbjct 5991 ATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTTTTC 6050 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| | || || ||||| || ||||| Sbjct 6051 CCGGTCAAGGTCTTTACAAAGATCTGCAT 6079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381126605592240