Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq39 107 1e-18 seq4804 82.4 6e-11 >seq39 Length=347859 Score = 107 bits (118), Expect = 1e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| || || || ||||||||||| ||| | | | ||||| | || Sbjct 7472 ATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCTTCCAGCTG 7531 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||||||| | |||| | || |||||| ||||| ||||| ||||| || || Sbjct 7532 TTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTT 7591 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| | || ||||| ||||| || || |||| ||| |||||||| || || Sbjct 7592 GGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGT 7651 Query 15340 CAGAGTTTTTACAAAAATTTGCATATT 15366 || ||| || ||||| || ||||| || Sbjct 7652 CAAAGTCTTCACAAAGATCTGCATTTT 7678 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| | | || | ||| |||||||| || || || |||||||| ||| Sbjct 6309 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 6368 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | ||||||||||| | |||| | || |||||| ||| Sbjct 6369 AGTGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 6428 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| || ||| ||| || | || ||||| || || || || Sbjct 6429 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACC 6488 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| |||||||| || |||| || |||||||| || ||||| Sbjct 6489 TCCAAGGTGATGGTTTTCCCGGTCAAGGTCTTTACAAAGATCTGCAT 6535 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| |||| | | || | ||| |||||||| || || || |||||||| ||| Sbjct 7221 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 7280 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | ||||||||||| | |||| | || |||||| ||| Sbjct 7281 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 7340 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| || ||| ||| ||| | || ||||| || || || || Sbjct 7341 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 7400 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| |||||||| || |||| || |||||||| || ||||| Sbjct 7401 TCCAGGGTGATGGTTTTCCCGGTCAAGGTCTTTACAAAGATCTGCAT 7447 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| | | || | || || ||||| || || || |||||||| ||| Sbjct 5853 CCACCTCTCAGACGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 5912 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | ||||||||||| | |||| | ||||| ||| ||| Sbjct 5913 AGTGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGTTGATCGGGAGGA 5972 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| || ||| ||| || | || ||||| || || ||| || Sbjct 5973 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCCACC 6032 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| |||||||| || |||| || |||||||| || ||||| Sbjct 6033 TCCAGGGTGATGGTTTTCCCGGTCAAGGTCTTTACAAAGATCTGCAT 6079 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTTCTAAT 15217 ||| |||||||| || || || |||||||| || | ||| | || | ||||| | Sbjct 6788 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC--TGAGAGTGTGCGGCCATCTTCCAGC 6845 Query 15218 TGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATT 15277 ||||||||||| | |||| | || |||||| ||||| ||||| ||||| || Sbjct 6846 TGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATC 6905 Query 15278 TTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCT 15337 ||| ||| ||| | || ||||| || || ||| || || | || |||||||| || Sbjct 6906 TTGGCCTTGACATTCTCAATGGTGTCACTGGGTTCCACCTCAAGAGTTATGGTTTTGCCA 6965 Query 15338 GTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| || || ||||| || ||||| Sbjct 6966 GTCAAGGTCTTCACAAAGATCTGCAT 6991 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| | | || | || || ||||| || || || |||||||| ||| Sbjct 5625 CCACCTCTCAGACGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 5684 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | ||||||||||| | |||| | || |||||| ||| Sbjct 5685 AGTGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 5744 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| || ||| ||| || | || ||||| || || ||| || Sbjct 5745 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCCACC 5804 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| |||||||| || |||| || || ||||| || ||||| Sbjct 5805 TCCAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 5851 >seq4804 Length=43647 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || ||||| || || || |||||||| || ||| | | | ||||| | ||| Sbjct 5467 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTCCAGCTGT 5408 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 |||||||| | |||| | ||||| ||| ||||| ||||| ||||| || ||| Sbjct 5407 TTGCCAGCAAAGATCAGCCTCTGTTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTG 5348 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || ||||| || || ||| || || | ||| |||||||| || ||| Sbjct 5347 GCCTTGACGTTCTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTTTTCCCGGTC 5288 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | || || ||||| || ||||| Sbjct 5287 AAGGTCTTCACAAAGATCTGCAT 5265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361948432995480