Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq39 87.8 2e-12 seq4804 84.2 2e-11 >seq39 Length=347859 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--ATCTT 20057 |||| || || || || || || || |||||||| ||| | ||| | | ||||| Sbjct 5871 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGG--AGAGTGTGCGGCCATCTT 5928 Query 20058 CCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGG 20117 ||| |||||||| ||| | || ||||||||||||||| || | |||||| ||||| Sbjct 5929 CCAGCTGTTTGCCAGCAAAGATCAGCCTCTGTTGATCGGGAGGAATGCCTTCCTTGTCCT 5988 Query 20118 CAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTT 20177 || || || || | ||| | || | |||||| |||| ||| ||||||| Sbjct 5989 GGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTTT 6048 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | |||||||| || || ||||| || ||||| Sbjct 6049 TCCCGGTCAAGGTCTTTACAAAGATCTGCAT 6079 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 20005 ATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--ATCTTCCAAT 20062 ||| || || || || || || |||||||| ||| | ||| | | |||||||| Sbjct 7016 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG--AGAGTGTGCGGCCATCTTCCAGC 7073 Query 20063 TGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATT 20122 |||||||| ||| | || ||||||||||||||| || | |||||| ||||| || Sbjct 7074 TGTTTGCCGGCAAAGATCAGCCTCTGTTGATCGGGAGGAATGCCTTCCTTGTCCTGGATC 7133 Query 20123 TTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCG 20182 || || || | ||| | || | |||||| || | ||| |||||||| ||| Sbjct 7134 TTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCCACCTCTAGGGTGATGGTTTTCCCG 7193 Query 20183 GTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| || || ||||| || ||||| Sbjct 7194 GTCAAGGTCTTCACAAAGATCTGCAT 7219 >seq4804 Length=43647 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||| || || || || || || || |||||||| || | ||| ||||||| Sbjct 5473 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTCC 5414 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | |||||||| ||| | || ||||||||||||||| || | |||||| ||||| Sbjct 5413 AGCTGTTTGCCAGCAAAGATCAGCCTCTGTTGATCGGGAGGAATGCCTTCCTTGTCCTGG 5354 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || || || || | ||| | || | |||||| |||| ||| |||||||| Sbjct 5353 ATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTTTTC 5294 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||||||| || || ||||| || ||||| Sbjct 5293 CCGGTCAAGGTCTTCACAAAGATCTGCAT 5265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419319854770680