Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq6273 116 3e-21 seq3926 116 3e-21 seq177 105 6e-18 >seq6273 Length=24169 Score = 116 bits (128), Expect = 3e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 13167 GCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTC 13226 || || | ||||||||||| || ||||| || ||||| || || || ||||| || |||| Sbjct 17695 GCCATACCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAGACCTC 17636 Query 13227 GTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTG 13286 |||| || | ||||||||| | ||||| || || ||||| || |||||||||||||| | Sbjct 17635 GTTTCTTTAGCCAAAATATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAG 17576 Query 13287 CAAACGCTATCAACCTTTCACC 13308 |||| |||| | | |||||| Sbjct 17575 CAAATGCTACTACACGTTCACC 17554 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 12956 TTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATT 13015 || ||| | |||| ||| || | || |||||| || || || || || ||||| |||||| Sbjct 18322 TTGTTAAAACCTAGTTCCAGGATCAGTCTGTCTGCTACGAATTCAATATACTGCTTCATT 18263 Query 13016 AAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAA 13065 ||| ||||||||||| |||| |||||||||| |||||||| ||||| Sbjct 18262 AAAATGCAGTTCATTCCGATTAGGTTTACAGGCAATGCTTCTGTCAAAAA 18213 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||| |||||||| || | ||| |||||||||||||||||||| || ||||| || || || Sbjct 15351 AATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGCAATCTG 15292 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | || |||| || || ||||| Sbjct 15291 GAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 15253 >seq3926 Length=149525 Score = 116 bits (128), Expect = 3e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 13167 GCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTC 13226 || || | ||||||||||| || ||||| || ||||| || || || ||||| || |||| Sbjct 65426 GCCATACCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAGACCTC 65367 Query 13227 GTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTG 13286 |||| || | ||||||||| | ||||| || || ||||| || |||||||||||||| | Sbjct 65366 GTTTCTTTAGCCAAAATATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAG 65307 Query 13287 CAAACGCTATCAACCTTTCACC 13308 |||| |||| | | |||||| Sbjct 65306 CAAATGCTACTACACGTTCACC 65285 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 12956 TTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATT 13015 || ||| | |||| ||| || | || |||||| || || || || || ||||| |||||| Sbjct 66053 TTGTTAAAACCTAGTTCCAGGATCAGTCTGTCTGCTACGAATTCAATATACTGCTTCATT 65994 Query 13016 AAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAA 13065 ||| ||||||||||| |||| |||||||||| |||||||| ||||| Sbjct 65993 AAAATGCAGTTCATTCCGATTAGGTTTACAGGCAATGCTTCTGTCAAAAA 65944 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||| |||||||| || | ||| |||||||||||||||||||| || ||||| || || || Sbjct 62991 AATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGCAATCTG 62932 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | || |||| || || ||||| Sbjct 62931 GAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 62893 >seq177 Length=5156772 Score = 105 bits (116), Expect = 6e-18 Identities = 132/180 (73%), Gaps = 1/180 (1%) Strand=Plus/Minus Query 5448 GAAAAACATTCCACTGTAAAACCCCACATAATAAAATCCAGACACTATTTTACACGTAAA 5507 |||||| ||||||| || || | | | |||| | |||||| || ||||| ||| | Sbjct 3175339 GAAAAAGCTTCCACTATAGAAGCTTAAAAAATAGATTCCAGAAACAATTTTGCACATTGC 3175280 Query 5508 ATTTCCAAATATCCACTGATCTAACTGATAATGTATTTGAAATGGAAATGACATAACAAA 5567 || |||||||| ||||||||||||| | |||| || ||| ||| | ||| | || || Sbjct 3175279 ATCTCCAAATACCCACTGATCTAACACAGAATGAATCCGAACTGGGATTGAGAAAATGAA 3175220 Query 5568 TAACAGATCGGATATGGCTAAATTTATTAAAAATATATCAGTTACAGTCTTTAACTTTCT 5627 | || ||| || | ||||||||||| || |||||||||| | | |||| || ||||| Sbjct 3175219 AATCAAATCAGAGACGGCTAAATTTAATAGGTATATATCAGTCATACTCTTGAA-TTTCT 3175161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430707794176560