Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq440 132 7e-26 seq1582 127 3e-24 >seq440 Length=994695 Score = 132 bits (146), Expect = 7e-26 Identities = 173/237 (73%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 || ||||| |||| |||||| || || || || || || |||||||| | || ||| Sbjct 579273 TTCACGATGTCAAAGCCCACGCTACCCCCAAAAGTACTTGGCTTCCAGTATTCAGGTGAG 579332 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 |||||||| || |||| || ||||| | ||| || |||||||| || || | ||| || Sbjct 579333 CAGATGACATTTCCCATAAGACCTTTCAAGGAGAAGGGAGCCCCAAGTTCAATCATGGTC 579392 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAACTCCAC 8919 ||||| |||||||| || || ||||||| || |||||| | | ||| || |||| Sbjct 579393 TCACCAAAGATGGCTCCAGGGCGTGGCTTTT-CAACAAGAAGAGCAGGGTATAATTCCAT 579451 Query 8920 AGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 ||| || || ||||| || || | ||||| ||||| ||||| ||||| ||||| Sbjct 579452 AGCATCAATATCTCCATAGAGCTCTTCAAGTTCTGCAGCCATTTCTTTTTCACCTGT 579508 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 |||||||| || |||| ||| ||||||||| ||||||| || ||||| ||||| || Sbjct 582200 GTCTGAAATAGGCGTTCATCATCCCATTCTGGGTGTTCTCCCTTAAGAACGTCGCAGACC 582259 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 | || ||||||| |||||| | || || |||||||| || || || |||| |||||| Sbjct 582260 CGATTATGTTCCCGGAGCCACAACGTGGCATACATCATCAGCCCTGGAACCAAGCCAAAG 582319 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || |||| | || | || || | | ||| ||||||||||| | Sbjct 582320 ACCTCCTGTCCTACAGAAAATTTCAGGTGGTCAGGGATGTGGGGTGGATAGATCATTTCT 582379 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCTG 9863 |||| ||||| || | || ||||||||||| || ||||| ||||| Sbjct 582380 GCCTGAGTTTCTTTCACAGTAGGCGGATACATTTCTCCATCAATCATCTG 582429 Score = 89.7 bits (98), Expect = 7e-13 Identities = 111/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088 ||||||||||| || || ||||| |||||| | || ||| | ||| ||| | || Sbjct 583556 CTTACCCCATGCCCAAGACCTTTTGTGAAGCCTGGTCCTTTCTGAGTATCTGTCTTGAAG 583615 Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148 ||||||| |||||||| ||| |||| |||| ||||| | || ||||| || ||||| Sbjct 583616 TACTGGTGAGTGAAATGCTGGGCAAAGAAGGTGAACATGACATTTGTGCCTTGAGGATCA 583675 Query 10149 GGAGTGAAGGTCCTCCGAAG-AAGAGTTTTT 10178 ||| |||| | |||| || |||| ||||| Sbjct 583676 GGAATGAATTTTCTCCTTAGCAAGAATTTTT 583706 >seq1582 Length=198694 Score = 127 bits (140), Expect = 3e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 8733 TTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAAC 8792 |||| | || ||||| | || || || | || || || |||||||| |||||||| Sbjct 106169 TTGCCGTGTTCACGATTCGGAAGCCGGCGGCACCACCAAAAGTGCTGGGCTTCCAGTATT 106110 Query 8793 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGA 8852 | |||||||||||| |||| ||| ||| || || | || || |||||||||| ||| | Sbjct 106109 CAGGGGAGCAGATGGGGTTCCCCAGGAGCCCCTTCAAAGAGAAGGGAGCCCCCATCTCTA 106050 Query 8853 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8912 ||||||| || |||||| |||||| || ||| |||||||| | |||| | | | Sbjct 106049 TCATGCTCTGTCCAAAGATGCCGTTGGAGTAGGTCTTCTCCACCAACAGGCCGGGGAAGA 105990 Query 8913 ACTCCACAGCCTCGATGTCTCCGTAAAG 8940 |||||| ||| || |||||||| || || Sbjct 105989 ACTCCAGAGCATCAATGTCTCCATACAG 105962 Score = 89.7 bits (98), Expect = 7e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9463 TGCCAGTGATACAACATGTTAAACTCGGAAAATATACGATTTTGGTACTGGAACGAAGTA 9522 |||||||| |||| | ||| ||||| | || || || |||||||||||| | Sbjct 102029 TGCCAGTGGTACAGCTGGTTGAACTCCAGAGCGATGCGGTTCTGGTACTGGAACTGGGCC 101970 Query 9523 CCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTGGTAGCCGCTGAGCTGCTGAACA 9582 |||||||| || || |||| ||||| || || ||||||||||||||||| ||||| || Sbjct 101969 CCAAAGAGAAGCTCAGGCTCAAACATCAGCTTCAAGTGGTAGCCGCTGAGATGCTGGACG 101910 Query 9583 TACTGCGTCACGATAATGTTGATTGTTTCCCC 9614 || | | | || ||| ||||| || || || Sbjct 101909 TAATCCTCAATGACAATTTTGATCGTCTCACC 101878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708061779043200