Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq6273 113 5e-20 seq3926 113 5e-20 >seq6273 Length=24169 Score = 113 bits (124), Expect = 5e-20 Identities = 114/147 (78%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 21487 ACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAA 21546 |||| || |||| |||| ||||| || | ||||||||||| || | |||||||| | Sbjct 17699 ACAAGCCATACCT-CATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAG 17641 Query 21547 TCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAAC 21606 |||| || |||| ||||||||| || ||||| | || |||||||| || || ||||| Sbjct 17640 ACCTCGTTTCTTTAGCCAAAATATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAAC 17581 Query 21607 GGCAGCAAATGCAACTAATCGTTCACC 21633 ||||||||||| |||| |||||||| Sbjct 17580 TGCAGCAAATGCTACTACACGTTCACC 17554 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||| ||||| ||||| || | ||| ||||||| | ||||||| | ||||| Sbjct 19697 TTTAGAAATCTGCATCCAAAGTGAATGAATTATCTGCAGGACTTGACATCACACCCATCC 19638 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||||| || | || | ||||| || || || || || ||||||| || ||| | Sbjct 19637 TTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGAGAGATATTCT 19578 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAATAT 21279 ||||||| ||||||||||| |||| || ||||| Sbjct 19577 CCATAAAGTCAAATGGATTCTCAGCCTTGAATAT 19544 >seq3926 Length=149525 Score = 113 bits (124), Expect = 5e-20 Identities = 114/147 (78%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 21487 ACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAA 21546 |||| || |||| |||| ||||| || | ||||||||||| || | |||||||| | Sbjct 65430 ACAAGCCATACCT-CATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAG 65372 Query 21547 TCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAAC 21606 |||| || |||| ||||||||| || ||||| | || |||||||| || || ||||| Sbjct 65371 ACCTCGTTTCTTTAGCCAAAATATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAAC 65312 Query 21607 GGCAGCAAATGCAACTAATCGTTCACC 21633 ||||||||||| |||| |||||||| Sbjct 65311 TGCAGCAAATGCTACTACACGTTCACC 65285 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||| ||||| ||||| || | ||| ||||||| | ||||||| | ||||| Sbjct 67406 TTTAGAAATCTGCATCCAAAGTGAATGAATTATCTGCAGGACTTGACATCACACCCATCC 67347 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||||| || | || | ||||| || || || || || ||||||| || ||| | Sbjct 67346 TTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGAGAGATATTCT 67287 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAATAT 21279 ||||||| ||||||||||| |||| || ||||| Sbjct 67286 CCATAAAGTCAAATGGATTCTCAGCCTTGAATAT 67253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531553202827200