Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq6273 132 6e-26 seq3926 132 6e-26 seq687 102 1e-16 seq3825 84.2 3e-11 >seq6273 Length=24169 Score = 132 bits (146), Expect = 6e-26 Identities = 102/121 (84%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||||||||| || || || ||||| || ||||||||||| || || || || | Sbjct 17689 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAGACCTCGTTTCT 17630 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | |||||||||||||| || || || |||||||||||||||||||| ||||||||||| | Sbjct 17629 TTAGCCAAAATATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 17570 Query 33446 C 33446 | Sbjct 17569 C 17569 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 33555 TTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33614 ||| ||| ||| |||| |||||||| || | | |||||||||||| ||||||||||| Sbjct 15366 TTCTTTAGAATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 15307 Query 33615 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACA 33674 || ||||| ||||| || || |||||||| | || || || | ||||||||| | Sbjct 15306 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCTTGGCT 15247 Query 33675 AAATCGTTCCGCC 33687 ||||| ||| || Sbjct 15246 GAATCGCTCCACC 15234 >seq3926 Length=149525 Score = 132 bits (146), Expect = 6e-26 Identities = 102/121 (84%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||||||||| || || || ||||| || ||||||||||| || || || || | Sbjct 65420 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAGACCTCGTTTCT 65361 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | |||||||||||||| || || || |||||||||||||||||||| ||||||||||| | Sbjct 65360 TTAGCCAAAATATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 65301 Query 33446 C 33446 | Sbjct 65300 C 65300 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 33555 TTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33614 ||| ||| ||| |||| |||||||| || | | |||||||||||| ||||||||||| Sbjct 63006 TTCTTTAGAATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 62947 Query 33615 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACA 33674 || ||||| ||||| || || |||||||| | || || || | ||||||||| | Sbjct 62946 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCTTGGCT 62887 Query 33675 AAATCGTTCCGCC 33687 ||||| ||| || Sbjct 62886 GAATCGCTCCACC 62874 >seq687 Length=330907 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| ||||| ||||| ||||| || || || || ||||||| || | ||| || Sbjct 133840 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 133899 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33447 ||||||||||||| || || | ||||| |||||||||||||| || ||||| || ||| Sbjct 133900 AGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCGAACGCA 133959 Query 33448 ATAAGTCTCTCTCC 33461 | | ||| || || Sbjct 133960 ACCACTCTTTCACC 133973 Score = 86.0 bits (94), Expect = 8e-12 Identities = 101/136 (74%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 32960 AAAAGTCAACATCTAAAGAAAAA---TGATTATCTTCTTGAGACATAACTCCCATTTTTT 33016 |||||||| ||||||||| ||| | ||||| | |||| ||||||||| | | | || Sbjct 128780 AAAAGTCAGCATCTAAAGTAAATACCTTATTATTTGCTTGGGACATAACTGCAAAATGTT 128839 Query 33017 GGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCA 33076 | ||||| || | | || || ||||| ||||||||||||| || || ||||||| Sbjct 128840 GATATTCTGAAACTCTCCTCTCAAAGAAATTGGTTTTTCCTTCCAGGGAAATGTTTTCCA 128899 Query 33077 TGAAATCAAACGGATT 33092 |||| ||||| || || Sbjct 128900 TGAAGTCAAAAGGGTT 128915 >seq3825 Length=175568 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || ||||| || || || || || | || || || |||||||| | Sbjct 110528 TCCAGCCGTAGAAGTGCATGCTGGTCAGCTTCCCGTAGTTGGGCTCCGCGATATGGATGT 110469 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| ||| || || || ||||||||||| |||| ||| || ||||| || | ||| |||| Sbjct 110468 TCAGAGACTGGCTCTGGTCGATGAAGGCCCCCCGGTCAGCGGCCATCTTCAGGATGGTCT 110409 Query 62182 TTTGTGGAATTTCCCA 62197 | || | || ||||| Sbjct 110408 TCTGGGAGATCTCCCA 110393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622540104004800