Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq39 122 8e-23 seq4617 116 4e-21 seq4804 107 2e-18 >seq39 Length=347859 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | |||||||| || || || || ||| | |||||| | || | ||| | | Sbjct 6079 ATGCAGATCTTTGTAAAGACCTTGACCGGGAAAACCATCACCCTGGAGGTGGAACCCAGT 6020 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| ||||| ||||| ||||| || |||||||||||| Sbjct 6019 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAA 5960 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | |||||||| || ||||||| | | || |||||| ||| Sbjct 5959 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACACTCTCCGACTACAAC 5900 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || || || ||| |||| ||||||||| | || ||||| || Sbjct 5899 ATCCAGAAGGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGAGGTGG 5853 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || || || ||| | |||||| | || | ||| | | Sbjct 7219 ATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAACCCAGT 7160 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| ||||| ||||| ||||| || |||||||||||| Sbjct 7159 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAA 7100 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | ||||||||| || ||||||| | | || |||||| ||| Sbjct 7099 CAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACACTCTCCGACTACAAC 7040 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || || || || ||||||| |||||| | || ||||| || Sbjct 7039 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 6993 >seq4617 Length=95303 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || ||||| || | |||||| | || | ||| | | Sbjct 85335 ATGCAGATCTTTGTCAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAACCCAGT 85394 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| ||||| ||||| ||||| || ||||| ||||| Sbjct 85395 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 85454 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | || |||||| || || ||||||| | | | || |||||| ||| Sbjct 85455 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 85514 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||||||||| || ||||||| ||||| Sbjct 85515 ATCCAAAAAGAATCCACCCTCCATCTTGTCCT 85546 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || ||||| || | |||||| | || | || | | Sbjct 85791 ATGCAGATCTTTGTCAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAGT 85850 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| ||||| ||||| ||||| || ||||| |||||| Sbjct 85851 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAA 85910 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | || |||||| || || ||||||| | | | || |||||| ||| Sbjct 85911 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 85970 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||||||||| || ||||||| ||||| Sbjct 85971 ATCCAAAAAGAATCCACCCTCCATCTTGTCCT 86002 >seq4804 Length=43647 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || || || ||| | |||||| | || | ||| | | Sbjct 5265 ATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTGGAGGTGGAACCCAGT 5324 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| ||||| ||||| ||||| || |||||||||||| Sbjct 5325 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAA 5384 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | |||||||| || ||||||| | | || ||||| ||| Sbjct 5385 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTACAAC 5444 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || || || ||| |||| ||||||||| | || || || || Sbjct 5445 ATCCAGAAGGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGGGGTGG 5491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478349594121600