Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq6273 96.9 9e-15 seq3926 96.9 9e-15 >seq6273 Length=24169 Score = 96.9 bits (106), Expect = 9e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||| | | |||||||||| |||||||| || ||||||||||| | ||| | Sbjct 17557 GAACGTGTAGTAGCATTTGCTGCAGTTGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCC 17616 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || ||||||||||| ||||| | | ||||| || || || ||||| |||||| | ||| Sbjct 17617 ATATTTTGGCTAAAGAAACGAGGTCTGATGCCCGGACTTACTTTTTCTAATGAGCTGATT 17676 Query 22609 AGCCGAGATGAGG 22621 || ||||||||| Sbjct 17677 AGTAGAGATGAGG 17689 >seq3926 Length=149525 Score = 96.9 bits (106), Expect = 9e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||| | | |||||||||| |||||||| || ||||||||||| | ||| | Sbjct 65288 GAACGTGTAGTAGCATTTGCTGCAGTTGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCC 65347 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || ||||||||||| ||||| | | ||||| || || || ||||| |||||| | ||| Sbjct 65348 ATATTTTGGCTAAAGAAACGAGGTCTGATGCCCGGACTTACTTTTTCTAATGAGCTGATT 65407 Query 22609 AGCCGAGATGAGG 22621 || ||||||||| Sbjct 65408 AGTAGAGATGAGG 65420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302480564882960