Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4804 127 2e-24 seq39 125 6e-24 seq4617 122 8e-23 >seq4804 Length=43647 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||||||||| |||||||| ||| ||||||| | || |||||| | Sbjct 1900 AATGCAGATCTTTGTAAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCCAG 1959 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | ||| || ||| ||||| ||||| ||||| || ||||| Sbjct 1960 CGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCA 2019 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || |||||||||||||| | ||||||| ||||| | ||| ||||| Sbjct 2020 GCAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 2079 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || ||| | || || | || ||||| || Sbjct 2080 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 2127 >seq39 Length=347859 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| |||||||| ||| ||||||| | || |||||| | | Sbjct 6535 ATGCAGATCTTTGTAAAGACCTTGACCGGGAAAACCATCACCTTGGAGGTGGAGCCCAGT 6476 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| ||||| ||||| || ||||| Sbjct 6475 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAG 6416 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| |||||||| | ||||||| ||||| | ||| ||||| Sbjct 6415 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACACTCTCCGACTACAAC 6356 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || ||| | || || | || ||||| || Sbjct 6355 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 6309 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| |||||||| ||| ||||||| | || |||||| | | Sbjct 6763 ATGCAGATCTTTGTAAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCCAGT 6704 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| ||||| ||||| |||||||| Sbjct 6703 GACACCATTGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 6644 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||||||||| | ||||||| ||||| | ||| ||||| Sbjct 6643 CAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 6584 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || ||| | || || Sbjct 6583 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCT 6552 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| |||||||||||||| ||| ||||||| | || |||||| | Sbjct 7676 AATGCAGATCTTTGTGAAGACTTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCCAG 7617 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | ||| || ||| ||||| ||||| ||||| || ||||| Sbjct 7616 CGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCA 7557 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| |||||||| | ||||||| |||||| | |||||||| Sbjct 7556 GCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGATTACAA 7497 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || ||| | || || Sbjct 7496 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCT 7464 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||| ||| ||||||| | || ||||| | | Sbjct 7219 ATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAACCCAGT 7160 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| ||||| ||||| || || ||| Sbjct 7159 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAA 7100 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||||||||| | ||||||| ||||| | ||| ||||| Sbjct 7099 CAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACACTCTCCGACTACAAC 7040 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || ||| | || || | || ||||| || Sbjct 7039 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 6993 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| |||||||| ||| ||||||| | || |||||| | | Sbjct 7447 ATGCAGATCTTTGTAAAGACCTTGACCGGGAAAACCATCACCCTGGAGGTGGAGCCCAGT 7388 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| ||||| ||||| || ||||| Sbjct 7387 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAG 7328 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| |||||||| | ||||||| ||||| | ||| ||||| Sbjct 7327 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 7268 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || ||| | || || Sbjct 7267 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCT 7236 Score = 118 bits (130), Expect = 9e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||| ||| ||||||| | || ||||| | | Sbjct 6307 ATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTGGAGGTGGAACCCAGT 6248 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| ||||| ||||| |||||||| Sbjct 6247 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 6188 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||||||||| | ||||||| ||||| | ||| ||||| Sbjct 6187 CAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACGCTCTCCGACTACAAC 6128 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 6127 ATCCAGAAGGAGTCCACCCTCCA 6105 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| |||||||| ||| ||||||| | || ||||| | | Sbjct 6079 ATGCAGATCTTTGTAAAGACCTTGACCGGGAAAACCATCACCCTGGAGGTGGAACCCAGT 6020 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| ||||| ||||| || || ||| Sbjct 6019 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAA 5960 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| |||||||| | ||||||| ||||| | ||| ||||| Sbjct 5959 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACACTCTCCGACTACAAC 5900 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || | || || | || ||||| || Sbjct 5899 ATCCAGAAGGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGAGGTGG 5853 >seq4617 Length=95303 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || ||||||| | || |||||| | | Sbjct 85791 ATGCAGATCTTTGTCAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAGT 85850 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| ||||| ||||| ||||| ||| Sbjct 85851 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAA 85910 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || |||||||| || | ||||||| ||||| | ||| ||||| Sbjct 85911 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 85970 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||||||||| || ||| | || || Sbjct 85971 ATCCAAAAAGAATCCACCCTCCATCTTGTCCT 86002 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || ||||||| | || ||||| | | Sbjct 85335 ATGCAGATCTTTGTCAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAACCCAGT 85394 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| ||||| ||||| ||||| || Sbjct 85395 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 85454 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || |||||||| || | ||||||| ||||| | ||| ||||| Sbjct 85455 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 85514 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||||||||| || ||| | || || Sbjct 85515 ATCCAAAAAGAATCCACCCTCCATCTTGTCCT 85546 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || ||||||| | || ||||| | | Sbjct 86019 ATGCAGATCTTTGTCAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAACCCAGT 86078 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| || || ||||| ||||| ||||| || Sbjct 86079 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 86138 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||||||||| || ||||||| ||||| | ||| ||||| Sbjct 86139 CAGAGGCTGATCTTTGCCGGCAAACAGTTGGAAGATGGCCGCACCCTCTCCGACTACAAC 86198 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || ||| | || ||| | || || || || Sbjct 86199 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCTACGTCTGAGGGGTGG 86245 Score = 105 bits (116), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || ||||||| | || || || | | Sbjct 86703 ATGCAGATCTTTGTCAAGACTTTGACTGGGAAGACCATCACCCTGGAGGTAGAACCCAGT 86762 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| || ||| ||||| ||||| ||||| ||||| || Sbjct 86763 GACACTATTGAAAACGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 86822 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || || |||||||| || | ||||||| ||||| | ||| ||||| Sbjct 86823 CAGAGACTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 86882 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 || || || || ||||| || ||| | || || | || |||||||| | ||| Sbjct 86883 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCTCCGTCTGAGAGGAGGCATTTA 86935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433051899648200