Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq6273 91.5 2e-13 seq3926 91.5 2e-13 seq687 87.8 2e-12 >seq6273 Length=24169 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 93593 ACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGA 93652 || ||||| | ||||| || || || |||||||| |||||||| | ||| ||||| || Sbjct 11448 ACCTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATGG 11389 Query 93653 TATTGAATTGGAAATATGACAAAACGATTAGGGTTATC 93690 |||||||| ||||| ||||||||||| | ||| ||||| Sbjct 11388 TATTGAATAGGAAAAATGACAAAACGGTGAGGATTATC 11351 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 93128 ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATT 93187 |||| |||||| || || | || || | ||| ||||||||||| ||||||||||| Sbjct 17675 ATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAGACCTCGTTTCTTTAGCCAAAATATG 17616 Query 93188 GAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 || |||||| |||||||| || || ||||| || || |||||||| || | |||||| Sbjct 17615 GATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCTACTACACGTTC 17557 >seq3926 Length=149525 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 93593 ACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGA 93652 || ||||| | ||||| || || || |||||||| |||||||| | ||| ||||| || Sbjct 58657 ACCTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATGG 58598 Query 93653 TATTGAATTGGAAATATGACAAAACGATTAGGGTTATC 93690 |||||||| ||||| ||||||||||| | ||| ||||| Sbjct 58597 TATTGAATAGGAAAAATGACAAAACGGTGAGGATTATC 58560 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 93128 ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATT 93187 |||| |||||| || || | || || | ||| ||||||||||| ||||||||||| Sbjct 65406 ATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAGACCTCGTTTCTTTAGCCAAAATATG 65347 Query 93188 GAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 || |||||| |||||||| || || ||||| || || |||||||| || | |||||| Sbjct 65346 GATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCTACTACACGTTC 65288 >seq687 Length=330907 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || || ||||||| | ||||| |||||||| ||||| || |||| || || Sbjct 135922 ATGTAGGTGTCTATTAACAAACTGTACATCTCAGAATGAACATTTTCTATTGATATCTGA 135981 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 || || |||||||| | |||||| | ||||||||||||||| Sbjct 135982 AAGCCATAGAAACAGCGAGCTTCTGGGATCTGCACTTCTTG 136022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556496891467200