Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq4804 141 8e-29 seq39 141 8e-29 seq4617 131 1e-25 >seq4804 Length=43647 Score = 141 bits (156), Expect = 8e-29 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| || || || ||||| ||||| |||| || || ||||| || Sbjct 1898 AAAATGCAGATCTTTGTAAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCC 1957 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| ||| | || || |||| || || || |||||||| || ||||| ||||| Sbjct 1958 AGCGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGAC 2017 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || ||||||||||||||| | || ||| ||||||| ||||||| ||| Sbjct 2018 CAGCAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACCCTCTCCGACTAC 2077 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| || || || |||||| | ||| | || |||| Sbjct 2078 AACATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCG 2115 Score = 131 bits (144), Expect = 1e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || || ||||| ||||| |||| || || |||||| ||| Sbjct 5264 GATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTGGAGGTGGAACCCAG 5323 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | |||| || || || |||||||| || ||||| |||||||| Sbjct 5324 TGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCA 5383 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | || || ||||| ||||||||| | || ||| |||||| |||| || ||||| Sbjct 5384 ACAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTACAA 5443 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 ||| || || || ||||| | || | || |||| || | || |||||| Sbjct 5444 CATCCAGAAGGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGGGGTGGTTTT 5495 >seq39 Length=347859 Score = 141 bits (156), Expect = 8e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || || ||||| ||||| |||| || || |||||| ||| Sbjct 7220 GATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAACCCAG 7161 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | |||| || || || |||||||| || ||||| |||||||| Sbjct 7160 TGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCA 7101 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | || || ||||||||||||||| | || ||| |||||| ||||||| ||||| Sbjct 7100 ACAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACACTCTCCGACTACAA 7041 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||| || || || |||||| | ||| | || |||| Sbjct 7040 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCG 7005 Score = 136 bits (150), Expect = 3e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| || ||||| ||||| ||||| |||| || || ||||| || Sbjct 7678 AAAATGCAGATCTTTGTGAAGACTTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCC 7619 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| ||| | || || |||| || || || |||||||| || ||||| ||||| Sbjct 7618 AGCGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGAC 7559 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || ||||| ||||||||| | || ||| |||||| |||| |||||| Sbjct 7558 CAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGATTAC 7499 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| || || || |||||| | ||| | || |||| Sbjct 7498 AACATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCG 7461 Score = 132 bits (146), Expect = 4e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || || ||||| ||||| |||| || || |||||| ||| Sbjct 6080 GATGCAGATCTTTGTAAAGACCTTGACCGGGAAAACCATCACCCTGGAGGTGGAACCCAG 6021 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | |||| || || || |||||||| || ||||| |||||||| Sbjct 6020 TGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCA 5961 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | || || ||||| ||||||||| | || ||| |||||| ||||||| ||||| Sbjct 5960 ACAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACACTCTCCGACTACAA 5901 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || || || ||||| Sbjct 5900 CATCCAGAAGGAGTCCAC 5883 Score = 129 bits (142), Expect = 5e-25 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || || ||||| ||||| |||| || || |||||| ||| Sbjct 6308 GATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTGGAGGTGGAACCCAG 6249 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || |||| || || || |||||||| || ||||| || || || Sbjct 6248 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCA 6189 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || ||||||||||||||| | || ||| |||||| ||||||| ||||| Sbjct 6188 GCAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACGCTCTCCGACTACAA 6129 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || || || |||||| Sbjct 6128 CATCCAGAAGGAGTCCACC 6110 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || ||||| ||||| |||| || || ||||| ||| Sbjct 6763 ATGCAGATCTTTGTAAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCCAGT 6704 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || |||||||| || ||||| || || || Sbjct 6703 GACACCATTGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 6644 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||||||| | || ||| ||||||| ||||||| |||||| Sbjct 6643 CAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 6584 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || || |||||| | ||| | || |||| Sbjct 6583 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCG 6549 >seq4617 Length=95303 Score = 131 bits (144), Expect = 1e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || || || || || || |||| || || |||||| ||| Sbjct 85334 GATGCAGATCTTTGTCAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAACCCAG 85393 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | |||| || || || |||||||| || ||||| || ||||| Sbjct 85394 TGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCA 85453 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || || |||||||| ||| | || ||| ||||||| ||||||| ||||| Sbjct 85454 GCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 85513 Query 22398 CATTCAAAAAGAATCCACCATACAT 22422 ||| ||||||||||||||| | ||| Sbjct 85514 CATCCAAAAAGAATCCACCCTCCAT 85538 Score = 131 bits (144), Expect = 1e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || || || || || || |||| || || ||||| ||| Sbjct 85790 GATGCAGATCTTTGTCAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAG 85849 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | |||| || || || |||||||| || ||||| || ||||| Sbjct 85850 TGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCA 85909 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | || || || |||||||| ||| | || ||| ||||||| ||||||| ||||| Sbjct 85910 ACAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 85969 Query 22398 CATTCAAAAAGAATCCACCATACAT 22422 ||| ||||||||||||||| | ||| Sbjct 85970 CATCCAAAAAGAATCCACCCTCCAT 85994 Score = 127 bits (140), Expect = 2e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || || || || || || |||| || || |||||| ||| Sbjct 86018 GATGCAGATCTTTGTCAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAACCCAG 86077 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | |||| || || || || ||||| || ||||| || ||||| Sbjct 86078 TGACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCA 86137 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || ||||||||||||||||| || ||| ||||||| ||||||| ||||| Sbjct 86138 GCAGAGGCTGATCTTTGCCGGCAAACAGTTGGAAGATGGCCGCACCCTCTCCGACTACAA 86197 Query 22398 CATTCAAAAAGAATCCACCATACAT 22422 ||| || || || |||||| | ||| Sbjct 86198 CATCCAGAAGGAGTCCACCCTCCAT 86222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419460565058200