Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3825 161 2e-34 seq23989 158 2e-33 >seq3825 Length=175568 Score = 161 bits (178), Expect = 2e-34 Identities = 170/217 (78%), Gaps = 5/217 (2%) Strand=Plus/Minus Query 244321 CCCCT-TGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGT-CGCGCTGGGCCAGC 244378 ||||| |||||||||||||||||| ||||||| ||||||| || | | | |||| ||||| Sbjct 105360 CCCCTCTGCTGACGGGGCTGCCCTGGTAGGTCTGGTAGGGCCCCTGCTCCCTGG-CCAGC 105302 Query 244379 TTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCG 244438 | ||||| | || || || |||||||||||||||||||||| || ||| | | || Sbjct 105301 TCGCAGCTGGCCTCCAGCGCCCAGTAGTAGATGGTCTCGAAGATCTGCTGGTTGAGG-CG 105243 Query 244439 C-GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTG 244497 | |||||| | || |||||||| || ||| | |||||| |||||||||| ||||| Sbjct 105242 CTGGGCCTGGGGGCTCTCGAAGGGGAAGCGCATGAGGATGAAGGCGTCGGCCAGGCCCTG 105183 Query 244498 CACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG 244534 ||| |||||||||||||| | || ||| ||||||| Sbjct 105182 CACCCCGATGCCGATGGGGCGATGGCGCCGGTTGGAG 105146 Score = 138 bits (152), Expect = 2e-27 Identities = 118/146 (81%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 |||| || ||||||||| || ||||||||||| || | ||||||||||| || ||||||| Sbjct 100602 ACCCGCTTCATGAAGAGATCCGGGATCCAGAGCGCGTAGAAGAGGTCCCGGGCCCTCTGC 100543 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| || ||||||||| |||| || | || ||||||| ||| | |||||||||| Sbjct 100542 TCTTCCTTCCCGGTGTTCTTCTTCAGGTCAAGGAAATCAAAGATGTCCAAGTGCCAGGGC 100483 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGG 245148 |||| ||||| |||| ||| ||||| Sbjct 100482 TCCAGGTAGATGGCGAAGGCCCCGGG 100457 Score = 104 bits (114), Expect = 4e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAG 243933 || ||| || |||||||||||||||| ||||| | |||| || |||||||| | | || Sbjct 110473 GATGTTCAGAGACTGGCTCTGGTCGATGAAGGCCCCCCGGTCAGCGGCCATCTTCAGGAT 110414 Query 243934 GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCC 243993 | |||||| || ||||| || |||||||||||| |||| |||| |||||||| | | Sbjct 110413 GGTCTTCTGGGAGATCTCCCACACCGTCTTGTAGAGCTGCTTCAGGTCCTCGGGGATCTC 110354 Query 243994 TTCGATGTTCTG 244005 ||||||||| Sbjct 110353 CGGGATGTTCTG 110342 >seq23989 Length=2047 Score = 158 bits (174), Expect = 2e-33 Identities = 169/217 (78%), Gaps = 5/217 (2%) Strand=Plus/Minus Query 244321 CCCCT-TGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGT-CGCGCTGGGCCAGC 244378 ||||| |||||||||||||||||| ||||||| ||||||| || | | | |||| ||||| Sbjct 780 CCCCTCTGCTGACGGGGCTGCCCTGGTAGGTCTGGTAGGGCCCCTGCTCCCTGG-CCAGC 722 Query 244379 TTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCG 244438 | ||||| | || || || |||||||||||||||||||||| || ||| | | || Sbjct 721 TCGCAGCTGGCCTCCAGCGCCCAGTAGTAGATGGTCTCGAAGATCTGCTGGTTGAGG-CG 663 Query 244439 C-GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTG 244497 | |||||| || |||||||| || ||| | |||||| |||||||||| ||||| Sbjct 662 CTGGGCCTGAGGGCTCTCGAAGGGGAAGCGCATGAGGATGAAGGCGTCGGCCAGGCCCTG 603 Query 244498 CACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG 244534 ||| |||||||||||||| | || ||| ||||||| Sbjct 602 CACCCCGATGCCGATGGGGCGATGGCGCCGGTTGGAG 566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943722074332800