Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq17630 87.8 1e-12 >seq17630 Length=3150 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/94 (83%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 114331 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGA 114388 || |||||||| ||||||||||||| || |||||||| ||| | ||| |||||||||| Sbjct 1642 TGGCATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAG-TATGTACGATCTAAGGA 1700 Query 114389 ACCAAAACTGATATATTGAGCCATTCGTGGTATC 114422 |||| | ||||| || ||||||||||| ||| || Sbjct 1701 ACCATAGCTGATTTAATGAGCCATTCGCGGTTTC 1734 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/94 (83%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 115528 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGA 115585 || |||||||| ||||||||||||| || |||||||| ||| | ||| |||||||||| Sbjct 1642 TGGCATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAG-TATGTACGATCTAAGGA 1700 Query 115586 ACCAAAACTGATATATTGAGCCATTCGTGGTATC 115619 |||| | ||||| || ||||||||||| ||| || Sbjct 1701 ACCATAGCTGATTTAATGAGCCATTCGCGGTTTC 1734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396809406728560