Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq4617 149 1e-30 >seq4617 Length=95303 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| || || ||||| || ||||||| ||| ||||| || ||| Sbjct 86914 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 86855 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || ||||||||||| | ||| ||| | || || ||||| || ||| Sbjct 86854 TCCAGCTGCTTGCCGGCGAAGATCAGTCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 86795 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || || |||||||| |||| || || | |||||| || || ||||| ||| Sbjct 86794 TGGATCTTAGCCTTGACGTTTTCAATAGTGTCACTGGGTTCTACCTCCAGGGTGATGGTC 86735 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| |||| ||||||||| || |||||||| Sbjct 86734 TTCCCAGTCAAAGTCTTGACAAAGATCTGCAT 86703 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| |||||||||||| || ||||||| ||| ||||| || ||| Sbjct 85546 AGGACAAGATGGAGGGTGGATTCTTTTTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 85487 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || ||||||||||| | ||| ||| | || || ||||| || ||| Sbjct 85486 TCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 85427 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || || ||||| || || | || || | ||| || || || ||||| ||| Sbjct 85426 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTC 85367 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| |||| |||||||| || |||||||| Sbjct 85366 TTCCCAGTCAAGGTCTTGACAAAGATCTGCAT 85335 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| |||||||||||| || ||||||| ||| ||||| || ||| Sbjct 86002 AGGACAAGATGGAGGGTGGATTCTTTTTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 85943 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || ||||||||||| | ||||||| | || || ||||| || ||| Sbjct 85942 TCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGTTGATCAGGAGGAATGCCTTCCTTGTCC 85883 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || || ||||| || || | || || | || || || || ||||| ||| Sbjct 85882 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 85823 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| |||| |||||||| || |||||||| Sbjct 85822 TTCCCAGTCAAGGTCTTGACAAAGATCTGCAT 85791 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| || || ||||| || ||||||| ||| ||||| || ||| Sbjct 86230 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 86171 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || || ||||| || || |||||||| | ||| ||| | || || ||||| |||||| Sbjct 86170 TCCAACTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCC 86111 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || || ||||| || || | || || | ||| || || || ||||| ||| Sbjct 86110 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTC 86051 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| |||| |||||||| || |||||||| Sbjct 86050 TTCCCAGTCAAGGTCTTGACAAAGATCTGCAT 86019 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| || || ||||| || ||||||| ||| ||||| || ||| Sbjct 86686 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 86627 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || ||||||||||| | ||| ||| | || || ||||| || ||| Sbjct 86626 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 86567 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || || ||||| || || | || || | |||||| || || ||||| ||| Sbjct 86566 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCTACCTCCAGGGTGATGGTC 86507 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| |||| |||||||| || |||||||| Sbjct 86506 TTCCCAGTCAAGGTCTTGACAAAGATCTGCAT 86475 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| || || ||||| || ||||||| ||| ||||| || ||| Sbjct 85774 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 85715 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || ||||||||||| | ||| ||| | || || ||||| || ||| Sbjct 85714 TCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 85655 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || || ||||| || || | || || | ||| || || || ||||| ||| Sbjct 85654 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTC 85595 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| |||| |||||||| || |||||||| Sbjct 85594 TTCCCAGTCAAGGTCTTGACAAAGATCTGCAT 85563 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| || || ||||| || ||||||| ||| ||||| || ||| Sbjct 85318 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 85259 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || ||||||||||| | ||| ||| | || || ||||| |||||| Sbjct 85258 TCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCC 85199 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || || || || || || | || || | || || || || ||||| ||| Sbjct 85198 TGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 85139 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| |||| ||||| || || ||||||||| Sbjct 85138 TTCCCAGTCAAGGTCTTCACAAAGATCTGCATT 85106 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| || || ||||| || ||||| | ||| ||||| || ||| Sbjct 86458 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 86399 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || ||||||||||| | ||| ||| | || || ||||| || ||| Sbjct 86398 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 86339 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || || ||||| || || | || || | || || || || ||||| ||| Sbjct 86338 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 86279 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| |||| |||||||| || |||||||| Sbjct 86278 TTCCCAGTCAAGGTCTTGACAAAGATCTGCAT 86247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178864223245840