Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq3825 89.7 5e-13 >seq3825 Length=175568 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 94180 TTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAG 94239 ||||| |||| || |||||||||||| |||| | | |||| | |||||| ||| Sbjct 100466 TTCGCCATCTACCTGGAGCCCTGGCACTTGGACATCTTTGATTTCCTTGACCTGAAGAAG 100525 Query 94240 AACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGAC 94299 ||| ||| || || | |||||||| | |||||||||||||| |||||| | || || Sbjct 100526 AACACCGGGAAGGAAGAGCAGAGGGCCCGGGACCTCTTCTACGCGCTCTGGATCCCGGAT 100585 Query 94300 CTTTTTATGAAACGCGTCGAGA 94321 || || ||||| || || |||| Sbjct 100586 CTCTTCATGAAGCGGGTGGAGA 100607 Score = 86.0 bits (94), Expect = 6e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 94084 ACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGC 94143 |||||||||| ||||||||| || ||||| ||| | |||||| ||||||| |||| ||| Sbjct 99348 ACCAATGGCAACTCCAACGGGCTGGTCCCCATGTTGAGGGTCTACAACAACACGGCTCGC 99407 Query 94144 TACGTGGACCAGGGTGG 94160 ||||||||||| || || Sbjct 99408 TACGTGGACCAAGGGGG 99424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494399898388800