Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq39 107 1e-18 seq4804 100 2e-16 seq4617 84.2 2e-11 >seq39 Length=347859 Score = 107 bits (118), Expect = 1e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || || || ||||||||||| |||| | | | ||||| | || Sbjct 7472 ATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCTTCCAGCTG 7531 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||||||| | |||| | ||| |||||| ||||| ||||||||||| || || Sbjct 7532 TTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTT 7591 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| | || || || ||||| || || |||| ||| |||||||| || || Sbjct 7592 GGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGT 7651 Query 15153 CAGAGTTTTTACAAAAATTTGCATATT 15179 || ||| || ||||| || ||||| || Sbjct 7652 CAAAGTCTTCACAAAGATCTGCATTTT 7678 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | || | ||| ||||| || || || || |||||||| ||| | Sbjct 6309 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 6368 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| | ||||||||||| | |||| | ||| |||||| ||| Sbjct 6369 AGTGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 6428 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || || | || || || || || || || Sbjct 6429 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACC 6488 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| |||||||| || |||| || |||||||| || ||||| Sbjct 6489 TCCAAGGTGATGGTTTTCCCGGTCAAGGTCTTTACAAAGATCTGCAT 6535 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || || || |||||||| ||| ||| | | | ||||| | || Sbjct 7244 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTG 7303 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||||||| | |||| | ||| |||||| ||||| ||||||||||| || || Sbjct 7304 TTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTT 7363 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| | || || || || || || || || | ||| |||||||| || || Sbjct 7364 GGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTTTTCCCGGT 7423 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || || |||||||| || ||||| Sbjct 7424 CAAGGTCTTTACAAAGATCTGCAT 7447 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || || || |||||||| ||| ||| | | | ||||| | || Sbjct 6560 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTG 6619 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||| || | |||| | ||| ||||| ||||| ||||||||||| || || Sbjct 6620 TTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 6679 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || || |||| || || || || || || |||| ||| |||||||| || || Sbjct 6680 GGCCTTGACGTTTTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGT 6739 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || || |||||||| || ||||| Sbjct 6740 CAAGGTCTTTACAAAGATCTGCAT 6763 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | || | ||| ||||| || || || || |||||||| ||| | Sbjct 6993 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 7052 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| | |||||||| || | |||| | |||||| ||| ||| Sbjct 7053 AGTGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGTTGATCGGGAGGA 7112 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || || | || || || || || ||| || Sbjct 7113 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCCACC 7172 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| ||| |||||||| || |||| || || ||||| || ||||| Sbjct 7173 TCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 7219 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || || || || |||||||| ||| ||| | | | ||||| | ||| Sbjct 5877 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCCAGCTGT 5936 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 |||||||| | |||| | |||||| ||| ||||| ||||||||||| || ||| Sbjct 5937 TTGCCAGCAAAGATCAGCCTCTGTTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTG 5996 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | || || || || || ||| || || | ||| |||||||| || ||| Sbjct 5997 GCCTTGACGTTCTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTTTTCCCGGTC 6056 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 | || |||||||| || ||||| Sbjct 6057 AAGGTCTTTACAAAGATCTGCAT 6079 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAAT 15030 ||| ||||| || || || || |||||||| || ||||| | || | ||||| | Sbjct 6788 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC--TGAGAGTGTGCGGCCATCTTCCAGC 6845 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 ||||||||||| | |||| | ||| |||||| ||||| ||||||||||| || Sbjct 6846 TGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATC 6905 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 ||| || ||| | || || || || || ||| || || | || |||||||| || Sbjct 6906 TTGGCCTTGACATTCTCAATGGTGTCACTGGGTTCCACCTCAAGAGTTATGGTTTTGCCA 6965 Query 15151 GTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| || || ||||| || ||||| Sbjct 6966 GTCAAGGTCTTCACAAAGATCTGCAT 6991 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || || || || |||||||| ||| ||| | | | ||||| | ||| Sbjct 5649 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCCAGCTGT 5708 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 |||||||| | |||| | ||| |||||| ||||| ||||||||||| || ||| Sbjct 5709 TTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTG 5768 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | || || || || || ||| || || | ||| |||||||| || ||| Sbjct 5769 GCCTTGACGTTCTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTTTTCCCGGTC 5828 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 | || || ||||| || ||||| Sbjct 5829 AAGGTCTTCACAAAGATCTGCAT 5851 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || || |||||||| ||| ||| | | | ||||| | ||| Sbjct 6105 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCATCTTCCAGCTGT 6164 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| || | |||| | ||| ||||| ||||| ||||||||||| || ||| Sbjct 6165 TTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTG 6224 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || || || || ||| || || | ||| |||||||| || ||| Sbjct 6225 GCCTTGACATTCTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTTTTCCCGGTC 6284 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 | || || ||||| || ||||| Sbjct 6285 AAGGTCTTCACAAAGATCTGCAT 6307 >seq4804 Length=43647 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | || | ||| ||||| || || || || |||||||| ||| | Sbjct 2127 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 2068 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| | |||||||| || | |||| | ||| |||||| ||| Sbjct 2067 AGGGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 2008 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || ||| | || || || ||||| || || Sbjct 2007 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACC 1948 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 |||| ||| |||||||| || |||| || |||||||| || ||||| || Sbjct 1947 TCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTTACAAAGATCTGCATTTT 1898 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || || || || |||||||| || |||| | | | ||||| | ||| Sbjct 5467 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTCCAGCTGT 5408 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 |||||||| | |||| | |||||| ||| ||||| ||||||||||| || ||| Sbjct 5407 TTGCCAGCAAAGATCAGCCTCTGTTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTG 5348 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | || || || || || ||| || || | ||| |||||||| || ||| Sbjct 5347 GCCTTGACGTTCTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTTTTCCCGGTC 5288 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 | || || ||||| || ||||| Sbjct 5287 AAGGTCTTCACAAAGATCTGCAT 5265 >seq4617 Length=95303 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || || || |||||||| ||| ||| | | | ||||| | || Sbjct 86906 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTG 86847 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||| ||| | |||| | ||| || || ||||| ||||||||||| || || Sbjct 86846 CTTGCCGGCGAAGATCAGTCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 86787 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || || |||| ||||| || || |||||| || | ||| ||||| || || || Sbjct 86786 AGCCTTGACGTTTTCAATAGTGTCACTGGGTTCTACCTCCAGGGTGATGGTCTTCCCAGT 86727 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || ||| || ||||| || ||||| Sbjct 86726 CAAAGTCTTGACAAAGATCTGCAT 86703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357164283219800