Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq440 161 1e-34 seq1582 113 7e-20 >seq440 Length=994695 Score = 161 bits (178), Expect = 1e-34 Identities = 207/283 (73%), Gaps = 2/283 (1%) Strand=Plus/Plus Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953 || || ||||||||||| || |||||| || | | || || ||||||||||| Sbjct 579225 GGGCAGCCCTTCACATTATTGCAGATGAGGCTTTGGAGTGAGGCTGTATTCACGATGTCA 579284 Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013 || || ||| || || || || || || |||||||| | || ||||||||||| || Sbjct 579285 AAGCCCACGCTACCCCCAAAAGTACTTGGCTTCCAGTATTCAGGTGAGCAGATGACATTT 579344 Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073 |||| || ||||||||||| || |||||||| || || || ||| ||||||| |||||| Sbjct 579345 CCCATAAGACCTTTCAAGGAGAAGGGAGCCCCAAGTTCAATCATGGTCTCACCAAAGATG 579404 Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTAGAGTTCGACAGCCTCGACGTC 9132 || || || || || ||||| || | |||| ||| ||| | ||| | ||| || | || Sbjct 579405 GCTCCAGGGCGTGGCTTTTCAAC-AAGAAGAGCAGGGTATAATTCCATAGCATCAATATC 579463 Query 9133 GCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 |||||||| |||| | || ||||| || || || |||||| Sbjct 579464 TCCATAGAGCTCTTCAAGTTCTGCAGCCATTTCTTTTTCACCT 579506 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 9754 TCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTC 9813 || ||| ||||||| |||||||| || ||||| |||||||||| || ||||| | Sbjct 582215 TCATCATCCCATTCTGGGTGTTCTCCCTTAAGAACGTCGCAGACCCGATTATGTTCCCGG 582274 Query 9814 AGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAACACTTCATTCCCCACT 9873 ||||| | ||||| |||||||| | || || || || ||||| || || | || || Sbjct 582275 AGCCACAACGTGGCATACATCATCAGCCCTGGAACCAAGCCAAAGACCTCCTGTCCTACA 582334 Query 9874 GCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGCACCTGGGTCTCTTTG 9933 | ||| ||| | || || | | ||| | ||| | ||| | |||| || ||||| Sbjct 582335 GAAAATTTCAGGTGGTCAGGGATGTGGGGTGGATAGATCATTTCTGCCTGAGTTTCTTTC 582394 Query 9934 ACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 || || || ||||||||||| || ||||| | ||| Sbjct 582395 ACAGTAGGCGGATACATTTCTCCATCAATCATCTG 582429 Score = 100 bits (110), Expect = 4e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATA--CTTCGCGTCGCCTATGCGAAAAT 9550 |||||||||||||| | ||| || | |||| || ||| | | | ||| |||| Sbjct 581216 ATGGAATTGTTGTACATGAACTGCTGGTAAGTGTAGTCTTGGTTTTGGATAT--GAAAGG 581273 Query 9551 CATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCT 9610 |||||| | |||| ||||||| |||||||||| |||||||| || ||||||| ||||| Sbjct 581274 TATCAGGTAGAAGAGGATGCCAGTGGTAGAGGGTGTTGAACTCTGCTGCTATTCTGTTCT 581333 Query 9611 GGTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTA 9668 | |||||||| | ||| ||| || | || || ||||| | || ||| ||||| Sbjct 581334 GATACTGAAATCGCTGGT--TGAAGAGAAGTTCTGGATCAAACTTCAGTCTGAAATGGTA 581391 Query 9669 CCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 || || | || || || || | | || | ||| || ||||||||||| Sbjct 581392 TCCACTTAAATGTTGCACGTAGTCTTCAATCACAATCTTGATGGTTTCCCC 581442 >seq1582 Length=198694 Score = 113 bits (124), Expect = 7e-20 Identities = 163/227 (72%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 8934 TTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACG 8993 |||| || |||||||| || || || | || || || |||||||| |||||||| Sbjct 106169 TTGCCGTGTTCACGATTCGGAAGCCGGCGGCACCACCAAAAGTGCTGGGCTTCCAGTATT 106110 Query 8994 CCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGA 9053 | |||||||||||| |||| ||| |||||| ||||| || || |||||||||| ||| | Sbjct 106109 CAGGGGAGCAGATGGGGTTCCCCAGGAGCCCCTTCAAAGAGAAGGGAGCCCCCATCTCTA 106050 Query 9054 TGATGCTCTCACCGAAGATGGCACCG--GGACGCGGT-TTTTCGACGATGAAGCCAGTGT 9110 | ||||||| || |||||| ||| ||| ||| || || || | | ||| | | Sbjct 106049 TCATGCTCTGTCCAAAGATG---CCGTTGGAGTAGGTCTTCTCCACCAACAGGCCGGGGA 105993 Query 9111 AGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCA 9157 ||| || | ||| || | ||| ||||| || |||||| | |||| Sbjct 105992 AGAACTCCAGAGCATCAATGTCTCCATACAGTACTTCCAGTTTGGCA 105946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723255043752000