Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3825 127 3e-24 seq6364 102 1e-16 >seq3825 Length=175568 Score = 127 bits (140), Expect = 3e-24 Identities = 115/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976 ||| ||||| | ||||||| | ||| || | |||||| || || || || ||||| Sbjct 110527 CCAGCCGTAGAAGTGCATGCTGGTCAGCTTCCCGTAGTTGGGCTCCGCGATATGGATGTT 110468 Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGTCTT 204036 |||||||||||| ||||||||||| | | |||| || |||||||| || | |||||||| Sbjct 110467 CAGAGACTGGCTCTGGTCGATGAAGGCCCCCCGGTCAGCGGCCATCTTCAGGATGGTCTT 110408 Query 204037 CTGCGAAATCTCCCACACCGTCTTG 204061 ||| || |||||||||||||||||| Sbjct 110407 CTGGGAGATCTCCCACACCGTCTTG 110383 >seq6364 Length=22263 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 214899 CGTGTCCCGCCAACCACTACACCGAATTTTGGAACTACCTGAACCGGTGTCTGTACTGCG 214958 ||||| || | | ||||||||||| | ||||||||||||| || |||| |||||||| Sbjct 6569 CGTGTGCCAACGAGCACTACACCGAGTATTGGAACTACCTGGACAGGTGCTTGTACTGCA 6628 Query 214959 GCGTGCGATGCACAGAGCAGCAGGTGGAAAAATCGACCTGCAGCGCCACTCACAACAGAG 215018 |||| || || | || | | ||||||| | |||||| | || |||||||| | Sbjct 6629 GCGTCCGCTGTAACGACCTGGAGGTGGAGGTGGTGCCCTGCAACAAGACCCACAACAGGG 6688 Query 215019 TGTGCGAATGCAAGCCTGGCTACCAC 215044 ||||| | |||||||| ||||||||| Sbjct 6689 TGTGCCAGTGCAAGCCGGGCTACCAC 6714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794635566076800