Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq441 260 5e-64 seq1449 105 3e-17 seq1687 98.7 4e-15 seq2170 87.8 7e-12 >seq441 Length=576793 Score = 260 bits (288), Expect = 5e-64 Identities = 1043/1609 (65%), Gaps = 61/1609 (4%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 || || || ||||| | || ||||| | || || || || |||| ||| | || || Sbjct 543810 GCCATAGGCATTGACTTGGGCACCACATACTCCTGCGTCGGAGTTTTCCAGCACGGGAAA 543869 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033 || || ||||| || || |||||||| || ||||| || | || |||||| Sbjct 543870 GTGGAGATTATCGCCAACGACCAAGGCAACCGCACTACACCGAGCTATGTTGCCTTTACG 543929 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAAA 451091 ||| | ||| | || | || | || ||||| ||||| | || ||| |||| | Sbjct 543930 GATACGGAACGCCTCATCGGAGATGCAGCTAAGAATCAAGTGGCTATG--AATCCCAACA 543987 Query 451092 ACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAA 451151 |||| | | ||||| || ||| | |||||||| | | |||||| ||| || || Sbjct 543988 ACACCATCTTCGATGCCAAGCGTCTCATTGGCCGCAAATTTGATGACCCTACGGTGCAGT 544047 Query 451152 AAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAG 451211 || | || || ||| ||| || | || || |||||| | | |||| Sbjct 544048 CCGATATGAAGCACTGGCCTTTCCGTGTGGTGTGTGAAGCTGGGAAGCCCAAGGTACAAG 544107 Query 451212 TAAATTATAAAGGTGAAACTAA-AACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTT 451270 | | ||||| ||||| || ||||| | ||||||||||||||| |||||||| | Sbjct 544108 TCGAGTATAAGGGTGAGCTCAAGAACTTCTT-TCCTGAAGAAATTTCCTCTATGGTATTG 544166 Query 451271 ACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGA-TGCAGTAAT 451329 || |||||||| |||| ||| || || | |||| ||| | || ||| ||||| Sbjct 544167 ACCAAAATGAAGGAAATAGCCGAGGCTTACCTGGGTTGCAAAGTC-CAGAGTGCTGTAAT 544225 Query 451330 TACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATAT 451389 |||||| || || || |||||||| | ||||| ||||| || ||||||||||| || Sbjct 544226 TACTGTACCTGCATACTTCAATGACTCCCAACGCCAAGCCACCAAAGATGCAGGTACCAT 544285 Query 451390 TGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 | | ||| | ||||| | || || |||||||| || || || ||||| | || ||||| Sbjct 544286 TACAGGTCTCAATGTATTGCGCATCATTAATGAGCCCACGGCTGCTGCCATTGCCTATGG 544345 Query 451450 ACTAGGAAAATCAAAAGA----AACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTG 451505 | ||| || || || | ||| || || ||| | | | ||||| || |||| Sbjct 544346 -TTTGGATAAAAAAGGGAGCAGAGCAGGTGAGAAGAATGTGCTGATCTTTGACTTGGGTG 544404 Query 451506 GAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAA 451565 | || || |||| ||| | | | ||||||||||| | |||||||| || | | Sbjct 544405 GTGGCACATTTGATGTTTCCATTTTGACCATTGAAGATGGCATCTTTGAAGTGAAATCTA 544464 Query 451566 CCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTG-GAATGGTTG 451624 | ||| ||||| ||| | || || || || |||| ||| || ||| | ||| Sbjct 544465 CTGCTGGAGATACCCATTTGGGTGGGGAGGACTTTGACAATCGCATGGTGAGCCATTTTG 544524 Query 451625 AAAACTGATGTTCAA-CGAAAAC-TAAAAGTAGATATTTCTACTAACCAAAAAGCACTTA 451682 | | ||||| || || | ||| || || ||| || ||| | |||| || Sbjct 544525 TGGA--GGAATTCAAGCGCAAGCATAAGCGT-GACATTGCTGGCAACAAGCGAGCAGTTC 544581 Query 451683 GACGTCTTAAAACATCAGCAGAAAAAGCTAAAATTACACTCAGTTCAACACAAACTA--C 451740 |||| || ||| | |||| ||| ||| ||| || ||||| | | | | | | Sbjct 544582 GACGGCTCCGCACAGCCTGTGAAAGAGCCAAACGTACTCTGAGTTC--CTCCACCCAGGC 544639 Query 451741 TAGTATAAACATTGATAGTTTAGTTGATGGAATGGATTATGCTACTACTC--TTACCCGT 451798 | ||| | ||||| ||| ||||||| || ||| | |||| || |||||||| Sbjct 544640 TTCTATTGAGATTGACTCATTATTTGATGGCATTGAT--TTCTACACATCAATTACCCGT 544697 Query 451799 GCTAAATTTGA----ATCAATTTGTTCCAGTATTTTTGCACGGGTA--ATGAAACCTGTT 451852 ||| ||||| |||| || | || | | | |||| | ||||||| Sbjct 544698 GCTCGCTTTGAGGAGCTCAA--TGCT----GATCTCTTCCGTGGTACTCTTGAACCTGTG 544751 Query 451853 GATCAAGTATTACATGATTCTAAAATTAGTAAAGATAAAATTGATGAAATTGTGCTTGTA 451912 || | | | | |||| |||| | |||| | ||| |||||||||| || || Sbjct 544752 GAGAAGGCTCTTCGTGATGCTAAGCTAGACAAAGGACAGATTAATGAAATTGTTCTGGTT 544811 Query 451913 GGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTT----GTCTTCTTATTTTGGAGG 451968 || || || || || || || || || ||| | || | | |||| ||| || Sbjct 544812 GGTGGCTCAACTCGTATCCCCAAGATCCAAAAGTTGCTCCAAGACTTC----TTTAATGG 544867 Query 451969 AAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCA 452028 |||| | ||| || ||| ||||||||||||||||||| |||||||||||||| || || Sbjct 544868 AAAAGAGCTAAACAAAAGCATAAATCCTGATGAAGCTGTGGCATATGGTGCTGCTGTGCA 544927 Query 452029 AGCAGCTATTCTAACAGGT-TCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATG 452087 || |||||||||| ||| || || ||||| | ||| ||||| | | |||| Sbjct 544928 GGCTGCTATTCTAATGGGTGACAAAT-CCGAAAATGTGCAAGACCTTCTGCTGCTTGATG 544986 Query 452088 TAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAAC 452147 || |||| || ||||| || |||| || |||||||| |||||||| ||||| |||| Sbjct 544987 TAGCACCACTTTCTCTGGGTATTGAGACTGCTGGTGGTGTGATGACTGCCTTAATCAAAC 545046 Query 452148 GAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAAC 452207 | || ||||||| || | | || || || | || | | | | | ||| Sbjct 545047 GTAACACAACTATTCCCACCAAGCAAACCCAGACTTTCA--CCACCTATTCAGA--CAAT 545102 Query 452208 CAG----GTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAAT 452263 ||| |||| | ||||||| ||| || || | || ||||| || |||||| Sbjct 545103 CAGAGTAGTGTGCTGGTACAAGTGTATGAGGGTGAGAGAGCCATGACCAAGGACAATAAT 545162 Query 452264 AAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATT 452323 || || | ||| || | ||||| ||| || | || || |||||| Sbjct 545163 CTGCTGGGCAAGTTTGACCTGACGGGTATTCCACCTGCACCTCGTGGTGTGCCCCAAATT 545222 Query 452324 GAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGA-AAAATC 452382 || | || | ||| |||||||||||||||| || ||||| | |||||| || || | | Sbjct 545223 GAGGTGACGTTTGACATTGATGCAAATGGTATCCTCAATGTTACTGCAGTGGACAAGAGC 545282 Query 452383 ATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAG 452441 | | |||||| |||| || |||||||| |||||||| ||| ||| | ||||| | Sbjct 545283 A-CAGGAAAA-GAGAACAAGATTACAATAACTAATGACAAAGGCCGCCTCAGCAAAGATG 545340 Query 452442 ATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGA 452490 | ||||| ||||| | |||||||| | ||||| || ||||| Sbjct 545341 ACATTGACCGCATGGTGCAAGAAGCAGAGCGTTACAAGGCAGAGGATGA 545389 >seq1449 Length=501666 Score = 105 bits (116), Expect = 3e-17 Identities = 117/154 (76%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| |||| || | || || || |||||||||||||| | || || || || || Sbjct 415008 GTTACAAATGCCGTGGTCACAGTCCCAGCTTATTTCAATGACTCCCAGCGTCAGGCTACA 414949 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| ||||||||| | ||||| || |||||||||||||| || || ||| Sbjct 414948 AAAGATGCCGGAACCATTGCTGGTCTCAATGTGCTCCGAATTATTAATGAGCCAACCGCA 414889 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAG 451466 ||||| | || ||||| || ||| || ||||| Sbjct 414888 GCTGCGATTGCTTATGG-CTTGGACAA--AAAAG 414858 >seq1687 Length=347344 Score = 98.7 bits (108), Expect = 4e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 451314 TTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTA 451373 |||| |||||||||| || || || |||||||| || || | || |||||||| || | Sbjct 33090 TTACCAATGCAGTAATCACAGTCCCAGCTTATTTTAACGACTCTCAGCGGCAAGCCACCA 33031 Query 451374 AAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAG 451433 ||||||| || |||||||| | ||||||||||| || || || ||||| || |||| Sbjct 33030 AAGATGCCGGCACCATTGCTGGCCTGAATGTTCTTCGCATCATCAACGAACCCACCGCAG 32971 Query 451434 CTGCTCTAGCATATGGACT 451452 | || | || ||||| || Sbjct 32970 CAGCCATTGCGTATGGTCT 32952 >seq2170 Length=193264 Score = 87.8 bits (96), Expect = 7e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || ||||||||||| ||||| |||||||| || |||||| | || |||||||||| || Sbjct 85235 GCCACTAAAGATGCTGGACAGATTGCTGGGTTGAATGTTTTGAGAGTTATTAATGAGCCA 85294 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAG 451454 ||||| || || ||||| |||||| ||| Sbjct 85295 ACAGCTGCAGCCCTAGCTTATGGATTAG 85322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974394989726240