Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq441 401 5e-106 seq1687 107 1e-17 seq312 105 5e-17 seq353 100 2e-15 seq1449 98.7 8e-15 seq3952 95.1 9e-14 seq2029 89.7 4e-12 seq2170 87.8 1e-11 >seq441 Length=576793 Score = 401 bits (444), Expect = 5e-106 Identities = 978/1463 (67%), Gaps = 28/1463 (2%) Strand=Plus/Minus Query 517213 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 517272 |||||| || ||||| || || ||| ||| || || | ||||| ||||| || Sbjct 545315 ATTAGTTATTGTAATCTTGTTCTCTTTTCCTGTGCTCTTGTCCACTGCAGTAACATTGAG 545256 Query 517273 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 517332 |||||||| ||||| | ||||| || || |||||||| || || || | | ||||| Sbjct 545255 GATACCATTTGCATCAATGTCAAACGTCACCTCAATTTGGGGCACACCACGAGGTGCAGG 545196 Query 517333 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 517392 ||| || || || | ||| | ||||| |||||| || || || | || || Sbjct 545195 TGGAATACCCGTCAGGTCAAACTTGCCCAGCAGATTATTGTCCTTGGTCATGGCTCTCTC 545136 Query 517393 ACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 517450 |||||| | | ||| | || | ||||| | ||||| |||||||| || || || | | Sbjct 545135 ACCCTCATACACTTGTACCAGCACACTAC--TCTGATTGTCTGAATAGGTGGTGAA-AGT 545079 Query 517451 CTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACC 517509 |||| ||| || ||||| |||||||| | | || | ||||| | |||||| Sbjct 545078 CTGGGTTTGCTTGGTGGGAATAGTTGTGTTACGTTTGATTAAGGCAGTCATCACACCACC 545019 Query 517510 TGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTT 517569 || || || | ||| |||||||| || | ||||||| || | || | ||| | || Sbjct 545018 AGCAGTCTCAATACCCAGAGAAAGTGGTGCTACATCAAGCAGCAGAAGGTCTTGCACATT 544959 Query 517570 TTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC 517629 ||| | | ||| | |||||||| || || | ||||||||||||||| |||||||| Sbjct 544958 TTCGGATTTGTCACCCATTAGAATAGCAGCCTGCACAGCAGCACCATATGCCACAGCTTC 544899 Query 517630 ATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGTTGTC 517688 ||||||||| | ||| ||||| | ||| ||||| || || | ||| | || || | Sbjct 544898 ATCAGGATTTATGCTTTTGTTTAGCTCTTTTCCATTAAAGAAGTCTTGGAGCAACTT-TT 544840 Query 517689 TTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTAT 517748 | ||| || ||||||| ||| || ||||| | |||||||||| | |||| ||| | Sbjct 544839 GGATCTTGGGGATACGAGTTGAGCCACCAACCAGAACAATTTCATTAATCTGTCCTTTGT 544780 Query 517749 CCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTG 517808 | || || | ||| | | | || || || ||||||||| | | || | || | Sbjct 544779 CTAGCTTAGCATCACGAAGAGCCTTCTCCACAGGTTCAAGAGTACCACGGAAGAGATCAG 544720 Query 517809 AACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TA-TAATCAATTCCTTCGAA 517866 | || || || || ||| | ||| | ||| | || ||||||| || || || Sbjct 544719 CATTGAGCTCCTCAAAGCGAGCACGGGTA--ATTGATGTGTAGAAATCAATGCCATCAAA 544662 Query 517867 CAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTC 517926 || || |||| ||||| | || || || || ||| || | |||||| || | ||| Sbjct 544661 TAATGAGTCAATCTCAATAGAAGCCTGGGTGGAGGAACTCAGAGTACGTTTGGCTCTTTC 544602 Query 517927 ACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAATCTGTTTTATAT 517984 ||| ||||| | || | ||| | || | ||| ||| | | || |||| Sbjct 544601 ACAGGCTGTGCGGAGCCGTCGAACTGC--TCGCTTGTTGCCAGCAATGTCACGCTTATGC 544544 Query 517985 TTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAAATCTTCACCTC 518042 || | |||||| || || |||| ||| | || | ||||| ||||| || || || | Sbjct 544543 TTGCGCTTGAATTCCTC--CACAAAATGGCTCACCATGCGATTGTCAAAGTCCTCCCCAC 544486 Query 518043 CCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAA 518102 |||| | |||| ||| | |||| | | |||| || | |||||||||| | ||||| Sbjct 544485 CCAAATGGGTATCTCCAGCAGTAGATTTCACTTCAAAGATGCCATCTTCAATGGTCAAAA 544426 Query 518103 GAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCAT------TTCTT 518156 | |||||| || |||||||||| ||||| || || |||||| | | || Sbjct 544425 TGGAAACATCAAATGTGCCACCACCCAAGTCAAAGATCAGCACATTCTTCTCACCTGCTC 544366 Query 518157 TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTC 518216 || |||||||| | |||||| |||| |||||||| || || |||||||| || | Sbjct 544365 TGCTCCCTTTTTTATCCAAACCATAGGCAATGGCAGCAGCCGTGGGCTCATTAATGATGC 544306 Query 518217 TCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGT 518276 ||| ||||| ||||| | ||| | ||||||||||| |||||||| | ||| || || | Sbjct 544305 GCAATACATTGAGACCTGTAATGGTACCTGCATCTTTGGTGGCTTGGCGTTGGGAGTCAT 544246 Query 518277 TAAAATATGCAGGAACAGTAATAACGGCA-TCAGTTACTTCTTTACCAATATAAGCGCTT 518335 | || |||||||| |||||||| || ||| || | |||| ||| | ||||| Sbjct 544245 TGAAGTATGCAGGTACAGTAATTACAGCACTCTG-GACTTTGCAACCCAGGTAAGCCTCG 544187 Query 518336 GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTG 518395 || ||| |||||||| | || | ||| || ||||||| ||| || | | | |||| Sbjct 544186 GCTATTTCCTTCATTTTGGTCAATACCATAGAGGAAATTTCTTCAGGAAAGAAGTTCTTG 544127 Query 518396 GATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAAT 518455 ||| | ||| |||| | | || || | | || | || || Sbjct 544126 AGCTCACCCTTATACTCGACTTGTACCTTGGGCTTCCCAGCTTCACACACCACACGGAAA 544067 Query 518456 GGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGT 518515 ||||||| |||||||| || || || | |||||| ||| | | ||||| | || Sbjct 544066 GGCCAGTGCTTCATATCGGACTGCACCGTAGGGTCATCAAATTTGCGGCCAATGAGACGC 544007 Query 518516 TTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCA 518575 || ||||| || || || ||| | ||||| || || |||||| || ||||||||||| Sbjct 544006 TTGGCATCGAAGATGGTGTTGTTGGGATTCATAGCCACTTGATTCTTAGCTGCATCTCCG 543947 Query 518576 ATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCA 518635 || || |||| || || ||||| | |||||| || || ||||| || ||||| || Sbjct 543946 ATGAGGCGTTCCGTATCCGTAAAGGCAACATAGCTCGGTGTAGTGCGGTTGCCTTGGTCG 543887 Query 518636 TTCGCAATAATTTCAACTTTACC 518658 || || ||||| || ||||| || Sbjct 543886 TTGGCGATAATCTCCACTTTCCC 543864 >seq1687 Length=347344 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 |||||||| ||||||||||||| || || || || ||||| || || || | | |||| Sbjct 32943 TTTTTATCCAGACCATACGCAATGGCTGCTGCGGTGGGTTCGTTGATGATGCGAAGAACA 33002 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||||||| | || |||||||| |||||||| | || || ||||||||||| Sbjct 33003 TTCAGGCCAGCAATGGTGCCGGCATCTTTGGTGGCTTGCCGCTGAGAGTCGTTAAAATAA 33062 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || || || || || |||| Sbjct 33063 GCTGGGACTGTGATTACTGCAT 33084 >seq312 Length=6374073 Score = 105 bits (116), Expect = 5e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 635438 AAATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTT 635497 || ||||| || ||||||||||| |||||||||||||| ||| | ||| | ||||| ||| Sbjct 4269239 AACTGTACGCTCATTTTGACAGAAGGAGATTCAGCTAAGACACTAGCTGTTTCTGGCCTT 4269180 Query 635498 AATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTT 635557 ||| | || || || | |||||||| || ||||| |||||||||||||||| || Sbjct 4269179 GGAGTTGTGGGTAGGGACAAATATGGAGTATTTCCACTGCGAGGAAAACTTTTGAACGTA 4269120 Query 635558 AGGGATGC 635565 |||| || Sbjct 4269119 CGGGAAGC 4269112 >seq353 Length=2866884 Score = 100 bits (110), Expect = 2e-15 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| ||||||| || ||||||||||| || ||| | || ||| | |||||| | | Sbjct 1110451 TGTACATTAATTTTAACTGAGGGAGATTCTGCCAAATCTTTAGCTGTCTCTGGTTTAGGT 1110392 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 ||||||||||||||| ||||| ||||| ||||| || |||||| || | |||||| | Sbjct 1110391 GTTATTGGAAGAGATAGATATGGGGTTTTTCCACTCAGGGGAAAAATTCTTAATGTTCGT 1110332 Query 635561 GATGC 635565 || || Sbjct 1110331 GAGGC 1110327 >seq1449 Length=501666 Score = 98.7 bits (108), Expect = 8e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||||| |||| ||||| || ||||| ||||||||||||| | ||| Sbjct 414860 TTTTTGTCCAAGCCATAAGCAATCGCAGCTGCGGTTGGCTCATTAATAATTCGGAGCACA 414919 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| |||| |||||||| || || || | || || || || ||||| Sbjct 414920 TTGAGACCAGCAATGGTTCCGGCATCTTTTGTAGCCTGACGCTGGGAGTCATTGAAATAA 414979 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || || || | ||||||| Sbjct 414980 GCTGGGACTGTGACCACGGCAT 415001 >seq3952 Length=275151 Score = 95.1 bits (104), Expect = 9e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| ||||||| || ||||||||||| || ||| | || ||| | |||||| | | Sbjct 137620 TGTACGTTAATTTTAACTGAGGGAGATTCTGCCAAATCTTTAGCTGTCTCTGGTTTGGGT 137561 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 ||||||||||||||| ||||| || || ||||| || |||||| || | |||||| | Sbjct 137560 GTTATTGGAAGAGATAGATATGGGGTATTTCCACTCAGGGGAAAAATTCTTAATGTTCGT 137501 Query 635561 GATGC 635565 || || Sbjct 137500 GAGGC 137496 >seq2029 Length=428850 Score = 89.7 bits (98), Expect = 4e-12 Identities = 135/192 (70%), Gaps = 9/192 (5%) Strand=Plus/Plus Query 1047664 AAATTTACAGGAAAATTATTTTATGATATTGTTATGGGTATTGAATTTAATCCTGAAATA 1047723 ||||| || || || || || ||| | | | ||||| |||||||||||||| | Sbjct 272783 AAATTCACTGGCAATTTCTTCTATAACTTCATGATGGGAATTGAATTTAATCC---ACGC 272839 Query 1047724 TTTGGAAC------TGATTTGAAACTGTTTTTTAATGGTAGACCCGGAATTATTGCTTGG 1047777 || |||| |||||| ||| ||||||||||||| |||| |||||| | | ||| Sbjct 272840 TTGGGAAAGTGGTTTGATTTCAAATTGTTTTTTAATGGCCGACCTGGAATTTTAGGATGG 272899 Query 1047778 AATTTGATTAATTTGTCGTGTGCAATGAAACAATACGAAAATTTTGGATACGTTTCTAAT 1047837 | |||||||||||| || | ||| |||||| | ||| | |||| | || ||||| Sbjct 272900 ACTTTGATTAATTTATCCTATGCTGCAAAACAACAGGAATTGTATGGACAAGTCACTAAT 272959 Query 1047838 TCAATGATTCTT 1047849 || ||| | ||| Sbjct 272960 TCTATGCTACTT 272971 Score = 86.0 bits (94), Expect = 5e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1047871 TATATTGTTGAttttttttATAATGAAAATTGGTATGTTCACACTGTAGATATTGCTCAT 1047930 ||| || | || ||||||| ||||||| ||||||| | | || | |||||||||||| Sbjct 278995 TATGTTCTGGACTTTTTTTGGAATGAAACTTGGTATTTAAAAACAATGGATATTGCTCAT 279054 Query 1047931 GATCATTTTGGATGGATGTTGGCTTGGGGTGATACTGTTTGGCTTCC 1047977 ||||| ||||||||| |||| ||||| || |||||||||||| Sbjct 279055 GATCACTTTGGATGGTATCTGGCCTGGGGAGACTGTGTTTGGCTTCC 279101 Score = 86.0 bits (94), Expect = 5e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1047871 TATATTGTTGAttttttttATAATGAAAATTGGTATGTTCACACTGTAGATATTGCTCAT 1047930 ||| || | || ||||||| ||||||| ||||||| | | || | |||||||||||| Sbjct 311644 TATGTTCTGGACTTTTTTTGGAATGAAACTTGGTATTTAAAAACAATGGATATTGCTCAT 311703 Query 1047931 GATCATTTTGGATGGATGTTGGCTTGGGGTGATACTGTTTGGCTTCC 1047977 ||||| ||||||||| |||| ||||| || |||||||||||| Sbjct 311704 GATCACTTTGGATGGTATCTGGCCTGGGGAGACTGTGTTTGGCTTCC 311750 >seq2170 Length=193264 Score = 87.8 bits (96), Expect = 1e-11 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 518154 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 518213 ||||||||| ||||| | ||||| || | || ||||| ||||| |||||||||| Sbjct 85340 CTTTGTCTTCAACCTTATCTAATCCATAAGCTAGGGCTGCAGCTGTTGGCTCATTAATAA 85281 Query 518214 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259 |||||||||||| | |||||||| ||| |||||||||||||| Sbjct 85280 CTCTCAAAACATTCAACCCAGCAATCTGTCCAGCATCTTTAGTGGC 85235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3778228094189680